RNA id: TU253634


Basic Information

Item Value
RNA id TU253634
length 1358
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC120546772
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25009513 ~ 25012350 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGATATCCAGaTGGAGTTCGACAGGCCGCTCTCTCTACCAGCACTTCCTTCAAAGGTTGTTTGAGGAACCTGAAGATCACCAAGGCTTCCAAGACCATGGATGTGCAGTTCAACAAGGCTCTAGAGATTAAAGGAGTCCAGCCTCTCTCCTGTCCTGCTGTAGCTGCGTAACCGTTAGCATAGATCTTCACCTTTGCGGTTTCCCTATTACAGTACTTCGTCCAGAACCTGCACTGGGCACAATGTTTATATATCAGTGTGTTGGCCAGGTGCTGAGTCCAAAAAGTAGGTAATATGTTTCACAAGAACTCTCTTGTTGGAGCCCAGGTTTGATTTTTATCAGGTACAAATGCATCAAGTTTCTCTGCTAAACAGCTTCATCCTGCCAAGCGTCACAATGTTTAAAATTCAAGAGAAAACTACAGAAAGCTCCTAAAAACAGGAAATTATCAGCTCAAAATTCAGCCATATTACTTCCTGCAGTTTATCAGTACTGTTATAGTTATGCATTGAATATGAAATATCCATAAAATATTACTTAGTCAGTGGTCTCTTAAGGAAAAAGGTTGGAAACCGCTACTATGGGGTACTATATCTGATTGAGTTGGGCTTAAATATGACACACACCTGTGTTACCTTGATGCCTCTGTACCTGATAAAGAGCCagattccttgtatgtgtttacACTTACTTGGCCGTTAAAGCTGTATCTACATTGTGCTCTTACTAAATTAAGAAAAAGGGAAGCATTCTATGTCCTTGTGAAATACAATTATCGATTCTTTCTGTcaaaatcacaaaataaaaacaaactcatCCAGTTTGTAGGGTCACTGACAATGTCTCAGTGTATCATATATTGCCTTTTGTAAAATACAAATATCTAAACGGcatgaaaacacctgtgttttGCTCCTGTTTGGGGCTAACAACGTACAAAGTTACAATTTTCAGTCTGAGAACATGACTTAATTTACAGTGTAAGGCTCTGGTCAATAAATCTTATCATGGCTACAAATTGAGGTctcagtgttttaaaatgtgttttatagtTTTTACATGAAGGAAGGAAGATATTAGTATAAAGACCTGTGCTATGGTTACAGGTGTTCACGGTATTCAAGCTAATATTTTTGGGATATGTGTGATTATTTAGACATTAAATCAGATTTGTTTCCCAGAGAAGTCCCTCTTGAAAAGGTAGAACAGGGTATGTTGAGTCCTTTAGTTTAATATTTACTGTCTCACCCTCAAGACAACAGATGAAGTTGGATTTCTTTTCAGCCCTCTGTACAGCAACAGATGTGACCAGTGCTCTTCAGAGATCTTAAAATTACAACGAAAACAGCTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253556 lncRNA upstream 352887 24655970 ~ 24656643 (+) True G187165
TU253548 lncRNA upstream 370046 24636725 ~ 24639484 (+) True G187158
TU253454 lncRNA upstream 622362 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 774779 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 821666 24185289 ~ 24187864 (+) False extl3
TU253656 lncRNA downstream 98805 25111046 ~ 25115288 (+) True G187212
TU253657 lncRNA downstream 98805 25111046 ~ 25143492 (+) False G187212
TU253684 lncRNA downstream 204912 25217153 ~ 25218783 (+) True G187235
TU253685 lncRNA downstream 215339 25227580 ~ 25227839 (+) True G187236
TU253687 lncRNA downstream 224290 25236531 ~ 25236879 (+) True G187238
XM_039781351.1 mRNA upstream 73 24810079 ~ 25009457 (+) True lama2
XM_039782287.1 mRNA upstream 378940 24530331 ~ 24630590 (+) False LOC120546974
XM_039781642.1 mRNA downstream 225586 25237827 ~ 25261246 (+) True fntb
XM_039781653.1 mRNA downstream 269693 25281934 ~ 25294676 (+) True slc10a1
XM_039782520.1 mRNA downstream 329352 25341593 ~ 25350144 (+) False LOC120547103
XM_039782512.1 mRNA downstream 329398 25341639 ~ 25347485 (+) False LOC120547103
XM_039782519.1 mRNA downstream 329431 25341672 ~ 25350144 (+) False LOC120547103
TU253601 other upstream 123 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 501717 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 926426 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 1419841 23578378 ~ 23589689 (+) True nfkbie
unassigned_transcript_1083 other downstream 207627 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1015819 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1264454 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1433409 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1433409 26445650 ~ 26452304 (+) False tfap2b

Expression Profile