RNA id: TU253684


Basic Information

Item Value
RNA id TU253684
length 1631
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G187235
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25217153 ~ 25218783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGCAAGTATTTACTCATAAACATGTGACATCTGTTCTCCAAGAATAACATGTTGCATTTTACATGTTGCAGGTAACATATTTCCACAAATACAAGTTGAAGTAgtcttaaggcgctgacacaccaacccgattatcggccgtcggacagtctggcgaggtcggtgactcgagttgTTTGGTGtcttccgtgccgtcgtcagtcggaggagcaaTCGgcgttcatttgggccgatgCGACTTGTTGAcccggccagtgggcagtcggactcaatgaccaattactggaaatgacgagcgggatgagcgtgacgaacgcctctccaaatctgacgaaaatcttttaaactgacctctgtcAATcttaaatgaagacagattcagcaactggatggcctatttctcgcttcaaatgttttcagaaacacattttcgGTGAACTagttttgtaaaatacgagatcgtattccgaacgagccggccattatggtctgttttgaaattcgggagaagccagacccacgggACGTGTTTGTCCAACGTGTTGtgacagattagcgccgcctgctgttatggagacgtattacatctcgcgcagaacgtacgctcaagtcggcgtcgcttcagtgtgttctgaggcacttttttgaccaactcggggagactgatcagtccgactgccttttctgccgaaggtcggtcgtcgggttggtgtgtcaaagcctttaaagaaaaaaaaagcagttctCGAAAACAACACATTGTGTATCTAGAGCTTAGTCCAGAACATCATTCAGTACAACATACTGCCATTTCACACAGTGCACAGATTAACAATTGTTTTGAGTAGCATTTAGTATTACTAAGTTGCAAAAAAATGTAGCCAAAGTTTGTTCGATGATGGGTCATTCTGTTTAAGTCTCAAACAGGCAACTCTGGTCAAATGCTATACTTGTCTTACGGTCAGTTGATTATTAACTTCATTGAAGTTGCaataaaagaaaggaaagaagagtGGATTGCATGCAAAACTCTCGCTTGTCCCTGTTTAGTCTGAggggataaaaaaagaaatggcatCTCCACTGGACTCTGTACAAAACAGTGAGAAAAGGACAGAATGACCAAGACATTATTATCATCACAGAGGGAATATTTCAGACCATCTAGAATATCACTGTGGACTTTTTTTATACAGCCCTCTAATGGTAATACATTAAATCAATGGCGTATCCTCATGATTACCGATCTACAATGCTTTGAAAAACATGGTATGTACAATGCAATGGGCAGTTATCAAACCATCTGTATAATATTTTCTGTTATAAACAAAGActataaaatggaaaaaaatatcttGAGTTTTGCTACAGGGAAATAGAATCATTTTGCTCTCAATGTTTCCCTCAGTTACCGACTTATACTGGTGTACTGGAGCCAATATTTGcatgaaaataataaaagaaaacaatgtAACGGCTGCATATATTTAGAATCCCATCGCATTAAAGGTAGTCATTGCAAATGCaataacaaccaaaaacaaacacataagaAAAGATAGTGAAATAGCATAATTTAACACTGAACATctttccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253657 lncRNA upstream 73661 25111046 ~ 25143492 (+) False G187212
TU253656 lncRNA upstream 101865 25111046 ~ 25115288 (+) True G187212
XR_005636936.1 lncRNA upstream 204803 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA upstream 204912 25009530 ~ 25012241 (+) False LOC120546772
TU253556 lncRNA upstream 560510 24655970 ~ 24656643 (+) True G187165
TU253685 lncRNA downstream 8797 25227580 ~ 25227839 (+) True G187236
TU253687 lncRNA downstream 17748 25236531 ~ 25236879 (+) True G187238
TU253692 lncRNA downstream 43052 25261835 ~ 25307399 (+) False G187241
TU253693 lncRNA downstream 43052 25261835 ~ 25268994 (+) True G187241
TU253696 lncRNA downstream 43052 25261835 ~ 25278554 (+) False G187241
XM_039781351.1 mRNA upstream 207696 24810079 ~ 25009457 (+) True lama2
XM_039782287.1 mRNA upstream 586563 24530331 ~ 24630590 (+) False LOC120546974
XM_039781642.1 mRNA downstream 19044 25237827 ~ 25261246 (+) True fntb
XM_039781653.1 mRNA downstream 63151 25281934 ~ 25294676 (+) True slc10a1
XM_039782520.1 mRNA downstream 122810 25341593 ~ 25350144 (+) False LOC120547103
XM_039782512.1 mRNA downstream 122856 25341639 ~ 25347485 (+) False LOC120547103
XM_039782519.1 mRNA downstream 122889 25341672 ~ 25350144 (+) False LOC120547103
TU253601 other upstream 207746 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 709340 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1134049 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 1627464 23578378 ~ 23589689 (+) True nfkbie
unassigned_transcript_1083 other downstream 1085 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 809277 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1057912 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1226867 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1226867 26445650 ~ 26452304 (+) False tfap2b

Expression Profile