RNA id: TU253687


Basic Information

Item Value
RNA id TU253687
length 349
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G187238
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25236531 ~ 25236879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGATGGTGGAGATGTGAGACGGGTGAAATTCGTTGTCCGTGAATCTGCATAACAAACATGTTTTCCCAACCCCAGAATCTCCGAGGAGCAGGAGTCGGAAGAGCACATCGTACTGCTTAGCCATAGTGTTGGGTAgtgttcaattaaaaaaaaaaaaaaaaaaccctagtCAGCTAACTCAGCGATGAATGACCGATCCCTCCCCACCTGCATTCCATGTCTGCTCAAATGGTCAACATGGGGCTTTGGCTATGCTTCTTTTTGTTCACTGACGCTGGGTCTGTCGGTGGGTGACAAAACAGGGATGCTCCAGCTTCCCAGGCAGCCTCCAGCTTCCAGTGGGCGCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253685 lncRNA upstream 8692 25227580 ~ 25227839 (+) True G187236
TU253684 lncRNA upstream 17748 25217153 ~ 25218783 (+) True G187235
TU253657 lncRNA upstream 93039 25111046 ~ 25143492 (+) False G187212
TU253656 lncRNA upstream 121243 25111046 ~ 25115288 (+) True G187212
XR_005636936.1 lncRNA upstream 224181 25009513 ~ 25012350 (+) True LOC120546772
TU253692 lncRNA downstream 24956 25261835 ~ 25307399 (+) False G187241
TU253693 lncRNA downstream 24956 25261835 ~ 25268994 (+) True G187241
TU253696 lncRNA downstream 24956 25261835 ~ 25278554 (+) False G187241
TU253695 lncRNA downstream 28877 25265756 ~ 25270902 (+) False G187241
TU253718 lncRNA downstream 101966 25338845 ~ 25339266 (+) True G187260
XM_039781351.1 mRNA upstream 227074 24810079 ~ 25009457 (+) True lama2
XM_039782287.1 mRNA upstream 605941 24530331 ~ 24630590 (+) False LOC120546974
XM_039781642.1 mRNA downstream 948 25237827 ~ 25261246 (+) True fntb
XM_039781653.1 mRNA downstream 45055 25281934 ~ 25294676 (+) True slc10a1
XM_039782520.1 mRNA downstream 104714 25341593 ~ 25350144 (+) False LOC120547103
XM_039782512.1 mRNA downstream 104760 25341639 ~ 25347485 (+) False LOC120547103
XM_039782519.1 mRNA downstream 104793 25341672 ~ 25350144 (+) False LOC120547103
unassigned_transcript_1083 other upstream 16591 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 227124 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 728718 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1153427 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 1648017 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 791181 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1039816 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1208771 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1208771 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1420462 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile