RNA id: TU253692


Basic Information

Item Value
RNA id TU253692
length 1989
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G187241
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25261835 ~ 25307399 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTTAAAGGataaaatagtttattttataGTCTCATAGTAAAGGTAGGCCTCAACTTGCAAGACAATTGTTGGCAGTATGTACAACATACTTGTAATTTCCATGGAATGGAATCagacaaacaaatacaccaatGATATCCTCctaaatggaaataaaatggaaacaatatacatacacacgtTTCCTAGACACGCAAAAtgcttcctttttttccttGGGGGATTCAGCAACATTGATTTTTACTGTGTAAAGCACAACACATCGAAAGGGAATTATTTTTACTTCCTTGTACTGCAAAAGACTGGAGCTACTTTTTGACATTCAATACCTATTTCATACCCTTAAGGAAAACTACGTGTGACAAATTGGCATTTTCCCATGACTCGTGAGATTACTACAAAATGCATAACATACTTTAGAACTTGAAACCCTCCAATCGAtgcttttttataatatataaaaacgagATGCCTAACGTATTCAGCCACCTAAAGTCATTCACTACTTCAAGCTAAAGGACAAAATACGATACAAGTTTAGGAATATTCTCCTTCAAAACAACAATTTTAACAAAGGAGccatgttttctctttttctttttaaatcttgtTAACAAACGTGTCAGGCAGAAAACATCTGCAATCCAGAGGGCCTGAGGTGGGTATCACTTTAACATATGCTTCAAAGCATCTTCACATTCTTTAgtggaaaaaagtattttttttaattttttaattttaaaaaggtaaacttctccaggacaatttatctaggtgtgtgtgtaaattctaaacaggtttgtttttattatcaagaataacaaaataaaacaaaacaaaacaaaaaaatatatataatatagcaGTGCTTGGTGTAGGCCAGGCGCgccctccccccccaaaaaaaaaacaacccggAGAGGGGGGGCTTTATTGAGGATACAAAAAAAGCATCAAGTCCTTAAGTAGCCAAGCTGCCTCTTTTTGGGTTTTGGATTGTAGATGttgccgggggggggggggtggatacCAATGACAGGGAAGGGAggtaaagagagaaacagagggatgggaaggggaaaaaaacctgAAGCTCTCTACACGTATTAAAGCGGTCATCTTCCACCCTGCTGACTTCCTCCCTCCTGTTGTGGGAGATTGggtggagggagaaggagagagagattgtggCGGCGGTGTGAGGAGGTTAGAGGGGTCATGAGTCTCCAGTGCGAGCCCACCCACGtatggaggagagagatggcGGACGGTGAGGGCGGCTGGAGGTGGTCGTTGCTGGCATGAGGGGGTTAATGAGCCTCGAGAGCTTTGAAGGCTGCATTTCCCTCTTGCCCTCCTCTGGGACCCGCTGCCTCGGCCGGGTCTGAACCGCTCCGCTCTCTAGCTGGCCTCCACGCGCAGCTTCTTCCTGTTGGGCGGCTCCTCGGCCTCCGACTCGGAGCTCGAGTCAGAGCCTCCGTCAAACGCCGACACAGCGCTGCCTTTGGGGTTGGTGTACAGGCTGCTGTCAGACGATGAGTAGCTGGCCTGGAGCTGGGCGGAGCCCTTCACCTTCTCCAGAGCACGGActgcgcgcacgcacgcacgcacacacacgcacacacacaaacacgaatGGAGGAAGAAGaggaggaagaaggggcCTGATGAACCAGCACTGTCTCTGCATGACGCCGCGAGGAGAAGGATGACGAGGCGGATGTGGATGGGAGACAGAAGTCTAAGTCTCTGTGGTGGCGGGTTCTGCTGGGGCCTTGGCCTCCCGTGGCCCCCTGAGGAAGACCCTCGGAGAGCACGATCGGGACTCGACACTCTGGAGGAGCCGGAGGAGGTGGTGGGGAAGGAGGAGGGCCCGAAGCACCACAGGGTCCACCGCTTCCATATACAGCCTCTTCGTAGGAGGGCAGCGCCACCTGGACGCCCTCAACCATGATGGAGCTGGACTGGCCTGAGACGCCCTGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253687 lncRNA upstream 24956 25236531 ~ 25236879 (+) True G187238
TU253685 lncRNA upstream 33996 25227580 ~ 25227839 (+) True G187236
TU253684 lncRNA upstream 43052 25217153 ~ 25218783 (+) True G187235
TU253657 lncRNA upstream 118343 25111046 ~ 25143492 (+) False G187212
TU253656 lncRNA upstream 146547 25111046 ~ 25115288 (+) True G187212
TU253718 lncRNA downstream 31446 25338845 ~ 25339266 (+) True G187260
TU253776 lncRNA downstream 98318 25405717 ~ 25440543 (+) False G187299
TU253774 lncRNA downstream 119696 25427095 ~ 25429908 (+) True G187299
TU253780 lncRNA downstream 126602 25434001 ~ 25434306 (+) True G187301
TU253790 lncRNA downstream 219048 25526447 ~ 25526872 (+) True G187310
XM_039781642.1 mRNA upstream 589 25237827 ~ 25261246 (+) True fntb
XM_039781351.1 mRNA upstream 252378 24810079 ~ 25009457 (+) True lama2
XM_039782287.1 mRNA upstream 631245 24530331 ~ 24630590 (+) False LOC120546974
XM_039782520.1 mRNA downstream 34194 25341593 ~ 25350144 (+) False LOC120547103
XM_039782512.1 mRNA downstream 34240 25341639 ~ 25347485 (+) False LOC120547103
XM_039782519.1 mRNA downstream 34273 25341672 ~ 25350144 (+) False LOC120547103
XM_039782513.1 mRNA downstream 34317 25341716 ~ 25347485 (+) False LOC120547103
XM_039782514.1 mRNA downstream 34378 25341777 ~ 25347814 (+) False LOC120547103
unassigned_transcript_1083 other upstream 41895 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 252428 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 754022 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1178731 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 1673321 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 720661 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 969296 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1138251 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1138251 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1349942 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile