RNA id: TU253718


Basic Information

Item Value
RNA id TU253718
length 422
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G187260
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25338845 ~ 25339266 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCTCCGCCCATCTCTCCAACTGTAGGCTAGGCTACTTCATTACTTCAACAGATTAGCTTGTATGTAGCCTAGGTCATGGTTTTTAGTTCAGTCTTTGTTGGATCCTTGGTTTTATTATGTTGAGTTTAGTatacgttccacttctgggattgctccttTGCTGCCGggaattccgccggatttcactcttttcggcagatgtccgttaccgctttctttctgttggaattttaaactccgttTGATTTATGAgggctatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaacctgaggtttctgttgcacgactaaaacaacttttgaagtacacatgttccaccaaaacaagttccttcctgaggctattttgtagTGGAACCGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253692 lncRNA upstream 31446 25261835 ~ 25307399 (+) False G187241
TU253696 lncRNA upstream 60291 25261835 ~ 25278554 (+) False G187241
TU253695 lncRNA upstream 67943 25265756 ~ 25270902 (+) False G187241
TU253693 lncRNA upstream 69851 25261835 ~ 25268994 (+) True G187241
TU253687 lncRNA upstream 101966 25236531 ~ 25236879 (+) True G187238
TU253776 lncRNA downstream 66451 25405717 ~ 25440543 (+) False G187299
TU253774 lncRNA downstream 87829 25427095 ~ 25429908 (+) True G187299
TU253780 lncRNA downstream 94735 25434001 ~ 25434306 (+) True G187301
TU253790 lncRNA downstream 187181 25526447 ~ 25526872 (+) True G187310
TU253870 lncRNA downstream 563672 25902938 ~ 25905402 (+) True G187378
XM_039781653.1 mRNA upstream 44169 25281934 ~ 25294676 (+) True slc10a1
XM_039781642.1 mRNA upstream 77599 25237827 ~ 25261246 (+) True fntb
XM_039781351.1 mRNA upstream 329388 24810079 ~ 25009457 (+) True lama2
XM_039782288.1 mRNA upstream 708255 24530331 ~ 24630590 (+) False LOC120546974
XM_039782520.1 mRNA downstream 2327 25341593 ~ 25350144 (+) False LOC120547103
XM_039782512.1 mRNA downstream 2373 25341639 ~ 25347485 (+) False LOC120547103
XM_039782519.1 mRNA downstream 2406 25341672 ~ 25350144 (+) False LOC120547103
XM_039782513.1 mRNA downstream 2450 25341716 ~ 25347485 (+) False LOC120547103
XM_039782514.1 mRNA downstream 2511 25341777 ~ 25347814 (+) False LOC120547103
unassigned_transcript_1083 other upstream 118905 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 329438 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 831032 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1255741 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 1750331 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 688794 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 937429 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1106384 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1106384 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1318075 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile