RNA id: TU253776


Basic Information

Item Value
RNA id TU253776
length 1305
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G187299
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25405717 ~ 25440543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaatcaatcTCTCACAAACAGCTAGGACAAAACAATAATTTATCTGCTAAAAACAGCATTGGACATACATGATAAAgcaaaaattattcataaaaaagAAATCTCCCATTGTACTGTTCTCACTGGGGTAAATCACGGGAGTGGGAGCGTGTTGTGTTTTTTAGATATGAAATGTCATACTATTTACAGCTTATGCTACAGTGGCACTAAGATGTCCATCATTTTAAAGGAATATGAAAAAGTACTtaggttgtgtttttgtttgatcTAATTATACAACAGCAATGAGGTAATATTTGTACATCAAAGATTTCCTTTGTTTTTCATCTCTCTCTGAAGAAAAGGCACACACGTCACATACACTTCATGCTAAATAGCCCTATCTGAAAAATACCTAATTCACTTTGTACAGCGGGAGATGATAGACACGGACACCTGGCTGTACCTTATTTTGGATCAGTTTTAACTGTGATattggatgtattttatttttactttttcaaagcaTTCCTATTTCCTTTGCTGCCTACATTGTAGGCAAGAGTCAATAAATTACATGTATTTACATAATATCAAATTGAAATCCTCAGAAGCTGAGGGGGATAAATCTCTTCGATGACCAAGGTTTTGATGTAAGATGGGGAGTATTTTGGAGGGAACACTGGCTCTAGcaattttctgtaaaataatcCACATATCTTTTCTTACTGGTTTGATATGGGAAGGTTGTGACTTCCATCTGACCCTGAGAGTTGTTTAGTTAACCAGACAGCATCAACAATGCCCATGATAGTTGTAAGTTCAGAAGAAAGCTGACCTaaatttaattttgtatttctcTTTCTTAGGTAGATGGTTAAAAGCACTTTCTTGTTCCAGtctccacatacagtacatgcataacCATAAACATCCACAACATTATGTTCCCCTTATTTCTAACTCGCTCTACTCCCATCAGTTTTACTAAATCCTCAACAACCAACATCCCTAAAAATTTTTATTGCTGTCTTCATCCACTGAGTCCTCAAATGTATCATTCAGATTCTACATTCTGGAAGGTCTGGTAAAGCAAAGGGaatatttcattgttttttttctttgggatGTCCATCCAGAAGCTAAGGTAGACAGGCACATAGGCTGAAGAGGtgtgatagaaagagagagatagagagagagagagagagagagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253718 lncRNA upstream 66451 25338845 ~ 25339266 (+) True G187260
TU253692 lncRNA upstream 98318 25261835 ~ 25307399 (+) False G187241
TU253696 lncRNA upstream 127163 25261835 ~ 25278554 (+) False G187241
TU253695 lncRNA upstream 134815 25265756 ~ 25270902 (+) False G187241
TU253693 lncRNA upstream 136723 25261835 ~ 25268994 (+) True G187241
TU253790 lncRNA downstream 85904 25526447 ~ 25526872 (+) True G187310
TU253870 lncRNA downstream 462395 25902938 ~ 25905402 (+) True G187378
TU253934 lncRNA downstream 489033 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA downstream 489505 25930048 ~ 25933947 (+) False abracl
TU253941 lncRNA downstream 526463 25967006 ~ 25967300 (+) True G187431
XM_039782698.1 mRNA upstream 37380 25351229 ~ 25368337 (+) True gpr176
XM_039782520.1 mRNA upstream 55573 25341593 ~ 25350144 (+) False LOC120547103
XM_039782519.1 mRNA upstream 55573 25341672 ~ 25350144 (+) False LOC120547103
XM_039782514.1 mRNA upstream 57903 25341777 ~ 25347814 (+) False LOC120547103
XM_039782512.1 mRNA upstream 58232 25341639 ~ 25347485 (+) False LOC120547103
XM_039781523.1 mRNA downstream 148685 25589228 ~ 25596709 (+) True katnbl1
XM_039781524.1 mRNA downstream 157135 25597678 ~ 25604734 (+) True emc7b
XM_039781522.1 mRNA downstream 169454 25609997 ~ 25650563 (+) True aven
XM_039781525.1 mRNA downstream 340239 25780782 ~ 25809922 (+) False fmn1
XM_039781526.1 mRNA downstream 350225 25790768 ~ 25809922 (+) True fmn1
unassigned_transcript_1083 other upstream 185777 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 396310 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 897904 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1322613 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 1817203 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 587517 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 836152 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1005107 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1005107 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1216798 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile