RNA id: TU253780


Basic Information

Item Value
RNA id TU253780
length 214
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G187301
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25434001 ~ 25434306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGGCTTTCTTGTTGCACAGCTGGGTGTCTTTGGCATTACCGACGCACTCTTTGCCACCGTAGTTTGGTGCTGGGTCATTGCACAGGCGTTTACGAGTCTGGAGACCACCTCCACAGGTGAGAGTGCAGGTATCCCACGGTGACCAGGGTCCCCAGTTGCCATTGATGGGGCACTGAGATTTCTGACACTTCTCGGTTTGCCGGCCCTCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253774 lncRNA upstream 4093 25427095 ~ 25429908 (+) True G187299
TU253718 lncRNA upstream 94735 25338845 ~ 25339266 (+) True G187260
TU253692 lncRNA upstream 126602 25261835 ~ 25307399 (+) False G187241
TU253790 lncRNA downstream 92141 25526447 ~ 25526872 (+) True G187310
TU253870 lncRNA downstream 468632 25902938 ~ 25905402 (+) True G187378
TU253934 lncRNA downstream 495270 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA downstream 495742 25930048 ~ 25933947 (+) False abracl
TU253941 lncRNA downstream 532700 25967006 ~ 25967300 (+) True G187431
XM_039782698.1 mRNA upstream 65664 25351229 ~ 25368337 (+) True gpr176
XM_039782515.1 mRNA upstream 86516 25341777 ~ 25347485 (+) True LOC120547103
XM_039781523.1 mRNA downstream 154922 25589228 ~ 25596709 (+) True katnbl1
XM_039781524.1 mRNA downstream 163372 25597678 ~ 25604734 (+) True emc7b
XM_039781522.1 mRNA downstream 175691 25609997 ~ 25650563 (+) True aven
XM_039781525.1 mRNA downstream 346476 25780782 ~ 25809922 (+) False fmn1
XM_039781526.1 mRNA downstream 356462 25790768 ~ 25809922 (+) True fmn1
unassigned_transcript_1083 other upstream 214061 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 424594 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 926188 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1350897 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 1845487 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 593754 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 842389 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1011344 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 1011344 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1223035 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile