RNA id: TU253790


Basic Information

Item Value
RNA id TU253790
length 426
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G187310
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25526447 ~ 25526872 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCTGTTAACTGTTTGGACAGTGCtgagttaaatataaaatactgtagatacaaatgttttttttcatctttttcttatcatatattctgttaatacactgcatatatctatatctatattattcttactactagtataatgtcactgctactacattgcacatatctgtacatgttcatacattgttcatattacatagccatatttattctgctgttataacactgcaatatatttcttgtcctgcctattcaccacctgtctatacgtGTAtgtcacattgcacttttctgcttttttgcacttctggttggacgcaaactgcatttcactgtctttgtacttgtactctgcacaatgacaataaagttgaatctaatctaatctaatcagtAATGCAACCAAAAGGCCACATCCAAAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253776 lncRNA upstream 85904 25405717 ~ 25440543 (+) False G187299
TU253780 lncRNA upstream 92141 25434001 ~ 25434306 (+) True G187301
TU253774 lncRNA upstream 96539 25427095 ~ 25429908 (+) True G187299
TU253718 lncRNA upstream 187181 25338845 ~ 25339266 (+) True G187260
TU253696 lncRNA upstream 247893 25261835 ~ 25278554 (+) False G187241
TU253870 lncRNA downstream 376066 25902938 ~ 25905402 (+) True G187378
TU253934 lncRNA downstream 402704 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA downstream 403176 25930048 ~ 25933947 (+) False abracl
TU253941 lncRNA downstream 440134 25967006 ~ 25967300 (+) True G187431
TU253938 lncRNA downstream 441334 25968206 ~ 25968925 (+) False LOC120546493
XM_039782698.1 mRNA upstream 158110 25351229 ~ 25368337 (+) True gpr176
XM_039782515.1 mRNA upstream 178962 25341777 ~ 25347485 (+) True LOC120547103
XM_039781523.1 mRNA downstream 62356 25589228 ~ 25596709 (+) True katnbl1
XM_039781524.1 mRNA downstream 70806 25597678 ~ 25604734 (+) True emc7b
XM_039781522.1 mRNA downstream 83125 25609997 ~ 25650563 (+) True aven
XM_039781525.1 mRNA downstream 253910 25780782 ~ 25809922 (+) False fmn1
XM_039781526.1 mRNA downstream 263896 25790768 ~ 25809922 (+) True fmn1
unassigned_transcript_1083 other upstream 306507 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 517040 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1018634 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1443343 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 1937933 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 501188 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 749823 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 918778 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 918778 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 1130469 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU394822 True 224 lncRNA 0.35 1 CI01000135 758550 ~ 758773 (+)
mexican tetra (Astyanax mexicanus) TU394822 True 1011 lncRNA 0.41 2 NW_019172676.1 808562 ~ 812033 (-)