RNA id: XM_039781434.1


Basic Information

Item Value
RNA id XM_039781434.1
length 3526
RNA type mRNA
GC content 0.40
exon number 19
gene id LOC120546493
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25955250 ~ 25968925 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGACATGCTTCAAACCGTCAGGGTCCACTGTGTCCCTGGCATTCTGACAAGGAAACTAACAAGCGTCTGCAGAACAGATGCAGCAAAACCACGACGCTGCCCTCTTCTGGACGAACAAGGAATGTACGTCGTTTCTCcattaaaggCAGTGAATGGGTCACACATCCTGAATGTCATCAAAAGAACATGGGCTGGATTACTTGGGTTTCGTTTGTTGGCCTTCTGTGGATTTATCCACTTTGTCATTTAGCCAAGAAGACCTCCGATGACCCGAACACATGTCTGACGACCAAAAAGAccaattttgttgttgttgataacTTCAATGGCTTCATCACTGCAAAAAACTATTCGAATCTGACAACAGATTGCATAGTGTTTCTGCAGAAAAATGAAACTCGACAAAATAAGTATAACCAAACCCAGAAGTGGCCTCAAATAATGAAAGAACAATTTTCTTATTTTGTGCGCATCTCAAAATGGCATATCAATCAGAATCTGTATCTGTATGTCCTGGAAGGGAGGTGCAATGCAAGTTTATCAGGCTTCAAAGAGGTCAACAATCAGTCTCGAGTGTTAACGTGTGTCTTCAATTACACTGTCACAGACTCTTGCCAGATTAGATGTTTGGATACAGCGAATGTATGCCAACATTCTAAGTTTGATGAAAACAACTGCAGGGAAATAGTTCTCCCGGTCACAGACAGATACATCATCAAcataacagcaacaaaaaacaactgtgTCAACTGTAACAATCCCGTGAAACAGCCCAATGAGAAAATTCAGTTGAATGTAACAATTGACATTAAAGGAGACAAACTCGATGCTGCCCAAGCTACTAAAATCATGAACAAAGTGTCCGGCCTGGTCACATCCATGACGGGGTCTTCAGCTGCAGTGACTGTGGCAGAAGGAGTTACGGGTGTcgtagtgagagaaacaaagcccGCGGACGTACAGGAAGTCTCCATTGCTTACAGGTCTTCGAATGACAGCATGAGTATTATTGAAAACAAAGAGACTCTGGCTACATTTTCAAGATCTGTCACAGTGTCAAAAGAAGCGTTCGTTAAAGCTAGTTTGAATGTTACCATACCATTTGCAAGTGTTATCCGATTCCTCAATCTGGCTTCGGATATGAAGAATAGCACTGTTTTAGGTAATGAGGTTTTAGCCATTGAAATGGGAACCACTATCACCAATCTCACAGACAAAATGCAGATAAATTTTTGGAACATGACATacAAAGGAATTCCATCTTGTCAATCATGGAATGGTGAAGGGAGTCAACCAAACTGGACCGATGACGGATGTCTGACAATACATGATGGACAGAACATTTCCTGCGAGTGTTcgcatttgacattttttgctgTCTTAATGAGTCCTCTTAATGAAACCATATCTAGTTCTGACCTGAACAACCTCACCATCATCACCCAAGTTGGCTGTGGATTGTCCATGTTCTTCCTCTGCATAGTCCTCTTCATGCACTTCCTGCTGAGGAGGACCAAGGCCAGCAATGCCACAAGGATTCTCATCCACCTGGTTTCAGCCATGTTCCTGCTTAATTTCACTTTCCTAATCAACAACGTTGTGGCAAATCTGAATAGCTCTGTGGCTTGTAAGATCATGGCGGCTCTCATGCACTACTCCATGTTGGCCACTTTCACTTGGTTTGCTGTGCAGGCCTTCCACCTCTGCTTGCAGATATACACCGGGGGCCAGATTGTAATCAGTCGCTACATACTCAAAGTCTCCATTGTCAGTTGGGTACTACCAAGTGTAGTTGTGATTGTACTGCTCATTTTAGGAAAATATGGTGAACAAGTCATTCACACTAGTGACAGTGAAAAAACCGTGGCCATGTGCTGGATAACAGACAATTTGGTGCACTACGTTGTTAACATAGGCTACTATGTTTTGGTCTTCATCTTCACCTTCACTACCTTCATCATCATACTGTCCTGGCTGTTCTTTCTCAAGAGAACAAGAACCGGACAAACGAGCACACATGGCAAAAAGATTGTAATCATCCTGGGACTCTGTTGCATGCTGGGTATCACTTGGGGTTTTGCCTTCTTCGCCTACGGTGCCCTCCGGATCCCCTCCTACTACATTTTCACAGTCCTCAATTCTTTCCAAGGTTTCTTCCTGTTCATCTACTACTATAACACCAGCCACACAGGAGACCTAACCAGCGGTGCGAGCGGTCATAAAAACTCAAACAGCACCAACACTATTAAAACCAGCCTGAGCAGCTTTGAGAACCCCTACACTGATCCgccagaaaagaaataaaaatcccTGAAAGCCAAATGGGGACCAAAGAGCGATGAAAAAGGTCAGCTTGAAGTAACTTGAGACTACAAGCAAGTACTAAACATTAACTGGACAGGTATGGTTTTATGACTTTGTAAAATGCATCTTTCCTGACATATGATAGTCAGTGTATATAGGGAAATTGCTTCAATACTACATATTACTCCTTGTTTAGGTTATCTTAGGATCAGAATTTGGTTTTAACAATTTCATTCAGTAAGGCTCATAAAAGGGTGTGTCatgcagtttaattaattacttttgagACCTTTTTGTAATGCAAAAGTTCATTGTAATTATTTTTGacagattttttaaatgaaatgcttTTGAATGATTAAGTACTTGTTCAGGGCCCTCTGATCTTCCACATATATCCAAAATATCTATAGTTGTGGATAGATTACCTGTTCCACCCATTAGAACTTGCAGTGTTTAAAAGCACGTTTTAACTCTTCGAAATATGAAAAGATGGAACGTGAGGAAATAAGAATCCTTTATTTAGTTacacaaacattaaaacatacattatGTATCAtacactatttttatttatttttttaaactcattttAAGTTGAGAAATTATTACTTCTACAACAAGAGAGATTCTGCTTCCTTGAGAGCTTGTTCCATTTCGGCAGCCTCCAGGGAAAAGTTCTCCCTTTCCTGCTTCATATGTTGCCGTGCTTTAGCGAGTTCTGTCATTGTTACTTGGATTTCCTAGAAGTGTGTAAAATGaggaacatttatttaaaaaaacaaaaacaaaaaacacagtccAACCATACCTTAAATTTACTACAAGAAATCGCAAAGTTACATTGGCCAATATACGAAGGAGTGTGACTCACCTCTAGCCGAGCACGTTGCTGTGATGCAGTGTCTCCAAACGCTTTTAATTCATTCAGCAGGTCTGTGGAGACACTCTGAAATGGAGACAATAAAATATGTGTTTAATAGTTGGCACTGCCTATGATAGCCAAAAGACTGTAACCCTTTGTGTAGGATTCAAGTATAGTctatatttaaattttaaaacaaGTAACATTTGTCACTTGTCTTTAATTGTGTGGTTTTATGGCATATAACAAGTGCATGTTTGTAGTTATTTGTGTGAGTTTGATAAagtatatgataaataaaacatgacTGTGCTTATAACATCAagtaaactgaaataaaatgtacgcACCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253934 lncRNA upstream 19991 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA upstream 21303 25930048 ~ 25933947 (+) False abracl
TU253870 lncRNA upstream 49848 25902938 ~ 25905402 (+) True G187378
TU253790 lncRNA upstream 428378 25526447 ~ 25526872 (+) True G187310
TU253780 lncRNA upstream 520944 25434001 ~ 25434306 (+) True G187301
TU253943 lncRNA downstream 37996 26006921 ~ 26027922 (+) False nudt14
XR_005637043.1 lncRNA downstream 278853 26247778 ~ 26249685 (+) True LOC120547280
TU254021 lncRNA downstream 288570 26257495 ~ 26260894 (+) False atp5mj
TU254024 lncRNA downstream 303443 26272368 ~ 26272595 (+) True G187508
TU254063 lncRNA downstream 346197 26315122 ~ 26315654 (+) True G187535
XM_039781435.1 mRNA upstream 5840 25937301 ~ 25949410 (+) True heca
XM_039782466.1 mRNA upstream 19979 25930002 ~ 25935271 (+) True abracl
XM_039781267.1 mRNA upstream 53668 25888269 ~ 25901582 (+) True clu
XM_039781268.1 mRNA upstream 53668 25888269 ~ 25901582 (+) False clu
XM_039781532.1 mRNA upstream 118818 25830950 ~ 25836432 (+) True LOC120546553
XM_039781433.1 mRNA downstream 1473 25970398 ~ 25992873 (+) False knl1
XM_039781432.1 mRNA downstream 1644 25970569 ~ 25992873 (+) True knl1
XM_039782326.1 mRNA downstream 37929 26006854 ~ 26036232 (+) True nudt14
XM_039782075.1 mRNA downstream 78547 26047472 ~ 26102398 (+) False jag2b
XM_039782074.1 mRNA downstream 78549 26047474 ~ 26102398 (+) True jag2b
unassigned_transcript_1083 other upstream 735310 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 945843 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1447437 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1872146 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 2366736 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 59135 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 307770 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 476725 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 476725 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 688416 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile