RNA id: TU253941


Basic Information

Item Value
RNA id TU253941
length 295
lncRNA type intronic
GC content 0.40
exon number 1
gene id G187431
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 25967006 ~ 25967300 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttttggttgaCTCTTACAGCTCTCATTAGCATCATTTCTGGCTGCAGCTggcagatgtttttttaaacgaAATGCTCATTAATTCACCGATtgctacctgctcagcaccaaatggCAGACGGACAACAAAAAGAGACTAgcttgtaaaaaataatgtagcGCTTAGCAGCTTTAGGGGAAAGAATGTGAACATTGGACTTAATTCACAAGGTAGCCAGAGACACAACTCCAAGTGAATgttaatgttgctctgtatctCCTTGgtgtaaaaataaatgcaggGTAACTAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253934 lncRNA upstream 31747 25929576 ~ 25935259 (+) False abracl
TU253932 lncRNA upstream 33059 25930048 ~ 25933947 (+) False abracl
TU253870 lncRNA upstream 61604 25902938 ~ 25905402 (+) True G187378
TU253790 lncRNA upstream 440134 25526447 ~ 25526872 (+) True G187310
TU253776 lncRNA upstream 526463 25405717 ~ 25440543 (+) False G187299
TU253938 lncRNA downstream 906 25968206 ~ 25968925 (+) False LOC120546493
TU253943 lncRNA downstream 39621 26006921 ~ 26027922 (+) False nudt14
XR_005637043.1 lncRNA downstream 280478 26247778 ~ 26249685 (+) True LOC120547280
TU254021 lncRNA downstream 290195 26257495 ~ 26260894 (+) False atp5mj
TU254024 lncRNA downstream 305068 26272368 ~ 26272595 (+) True G187508
XM_039781435.1 mRNA upstream 17596 25937301 ~ 25949410 (+) True heca
XM_039782466.1 mRNA upstream 31735 25930002 ~ 25935271 (+) True abracl
XM_039781267.1 mRNA upstream 65424 25888269 ~ 25901582 (+) True clu
XM_039781268.1 mRNA upstream 65424 25888269 ~ 25901582 (+) False clu
XM_039781532.1 mRNA upstream 130574 25830950 ~ 25836432 (+) True LOC120546553
XM_039781433.1 mRNA downstream 3098 25970398 ~ 25992873 (+) False knl1
XM_039781432.1 mRNA downstream 3269 25970569 ~ 25992873 (+) True knl1
XM_039782326.1 mRNA downstream 39554 26006854 ~ 26036232 (+) True nudt14
XM_039782075.1 mRNA downstream 80172 26047472 ~ 26102398 (+) False jag2b
XM_039782074.1 mRNA downstream 80174 26047474 ~ 26102398 (+) True jag2b
unassigned_transcript_1083 other upstream 747066 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 957599 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1459193 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 1883902 24079603 ~ 24083104 (+) True G186975
XR_005636955.1 other upstream 2378492 23578378 ~ 23588514 (+) False nfkbie
TU253978 other downstream 60760 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 309395 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 478350 26445650 ~ 26452304 (+) False tfap2b
TU254083 other downstream 478350 26445650 ~ 26452304 (+) False tfap2b
XR_005637060.1 other downstream 690041 26657341 ~ 26657503 (+) True LOC120547357

Expression Profile