RNA id: XM_039782814.1


Basic Information

Item Value
RNA id XM_039782814.1
length 2647
RNA type mRNA
GC content 0.54
exon number 7
gene id tfap2b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 26438486 ~ 26452365 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGGAATTCCTCACGGATCTGGTCACCCTGTTCGCTTtctcctgagagagagagagtcctcTTTCTATCTCCTGCTGTTCGCGCGTCGTTTCGGCTCTCCACGGAATTTAAACGTCACTCACGGTTGCGCGAGAGGCTTCACGCTCCGTGTGTCGCCAGTCCCCTGCCTCGCGCACATTAATATTCCTGTAAGTCTCAGTCATGAATAACAATTACACCGTATACCGGGGCTAGAGGCGGGCGCTCGGTGCTCACACTCAGAGCGGCGGCAGCTCTGGGCGGAGGAAGGTTCTTCATGGAGCTGTAGACCAGGTCGTGCCTGCAGATACAAACGCGCTGCCTTTACCTGGGATGAGATAGAATTTAGGCTATCTCGGCTCAACACTATCTTTAACATCCTGCTGTTTTACCGTAAGCCCGCTCGTCACACCAACAGAGGGTTTACAAATGTTAGTTCACTCCTACTCCACTGCGGACCGGCATGACGGTGTCTCGAGCCACAGCTCGCGCCTGTCCCAGCTGGGCTCGGTATCGCATGCGGGTCCCTACTCCAGCGCGCCACCGCTGTCTCATGCGCCAGCGTCGGACTTCCAGCCTCCGTACTTCCCGCCACCGTACCAGCCTCTTGCTCATTACCAGAGCCAGGACCCGTACTCCCACGTCAGCGATCCGTATTCCCTGAACTCCCTGCACCAGAGCCAGCAGAGCGCATGGGGGGCGCGGCAGCGGCAGGACGCCGGGGAGCGGATGGATAGCTCCGCTCTGTTGGCGCAACCTCGGGCCTCGCTGCCTCAGCTGTCCGGGCTGGACCCACGGCGGGACTACGGTGTGCGGCGGCCTGATGTGCTGCTGCACTCCGCTCACCCGGGACTGGAGCCCGGTATGGGCGACGGACTGCTGCACGGGCTGCATGGTATGGAAGATGTTCAGACCATTGACGACACAAACGGAACGAGCATCCTGGATCAATCAGTAATTAAGAAAgTTCCCATGCCACACAAGAACATGGCCTCTCTGATGGCCGGCAAGGACGGCCTGATCGGGGGAATCACCGTCAACATTAACGAGGTGTTCTGCTCGGTACCGGGCCGCCTGTCGCTGCTCAGCTCCACCTCCAAGTACAAAGTGACCGTAGGGGAGGTGCAGAGGAGACTGTCCCCGCCCGAGTGCCTCAACGCCTCCCTGTTGGGGGGCGTGTTGAGAAGAGCAAAGTCCAAAAACGGTGGGAAATGTCTGAGAGAAAAGCTGGAGAAGATTGGACTCAATTTACCTGCAGGAAGACGCAAAGCTGCCAATGTCACATTACTAACATCTCTTGTAGAAGGTGAAGCCGTCCACCTGGCCCGGGATTTCGGTTACATCTGCGAGACGGAGTTTCCCACCAAAGCCGTGAGCGAGTACCTCAACCGGCAGCACGCGGACCCCAACGAGCTGCACACGCGGAAAAACATGCTGCTGGCGACAAAACAGCTGTGTAAGGAGTTCACAGACCTACTGGCCCAGGATAGGACTCCCCTGGGCAACTCCAGGCCCAGCCCCATCCTGGAGCCCGGCATCCAGAGCTGcctctctcacttctccttCATCACGCACGGCTTCGGCTCACCTGCCATCTGCGCAGCGCTCACCACTCTCCAGAACTACCTCAACGAGGCTCTCAAAGGACTCGACAAGATGTTTCTTAACAACCCTCCCAACAACCGGCACGGGGACGGCGGCAACAAGGCCGACAAAGAGGAGAAGCAGCGGAAATGAAGTCTTCGGCGGGGGCGCTGACGGAGAGCTGAACGggaggcagacacacagacagaggcgTTACACCGTTACTTTTAACTTTACACCACTGCCACTGATCTGCCACACACAGGGCtgtggaggagaaggaggaggaggaggaggaggaggaaaaggaggaaggCTTGGTAGAGAGAAAAAGGCAGAGGAAGACACCTGTGGGCCAGTgtcagagagcacagagggaTGTTTCATCTGTGTTACGTTCTTTTCATTCCCCTGAGGACATGATGGTTACTGTGTTACATCCATTTCGCTCTGCCTGCCTGCATCCTGTGAGACTGAGATGCAGTGAGCAGCCAacaaacattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtctgagtgagtgagtgtgtgtgcgcttgtgttTGTCCTTACACAGAAAAAGCATTGTGGGTATGAAGATTGCGTGATGAGCACTCTATCTATCTGTGAAACAGGTTTATCTGGTTACTTAACGCAAGTATGAGGGAGGGTGTTAATTTATGtgtgtaaatatttatttatattaatttaaatGGATGGTTGTGTAAATAGGTGCACCAGCTATTTTGGAGTAGGCCTATTTATCTGTGATTTGACCTTTGTGAGCCGCTGTGTGGGAGTGGGGGGCTCATCCAGTGTTTTTCTGTTCTTATAGAGCTGTTGTGCTGATGATGGGTAGACATGCTTCTAATTGTCCAGTGATTTCATTTCGATCACATTGATAATAAACCATGTGTTTTATTATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09176 TFAP2A_B; transcription factor AP-2 alpha/beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254075 lncRNA upstream 8882 26430569 ~ 26431271 (+) False tfap2d
TU254064 lncRNA upstream 115419 26324516 ~ 26324734 (+) True G187536
TU254063 lncRNA upstream 124499 26315122 ~ 26315654 (+) True G187535
TU254024 lncRNA upstream 167558 26272368 ~ 26272595 (+) True G187508
TU254021 lncRNA upstream 179259 26257495 ~ 26260894 (+) False atp5mj
XR_005636872.1 lncRNA downstream 427081 26879446 ~ 26885536 (+) True LOC120546372
XR_005636870.1 lncRNA downstream 428356 26880721 ~ 26885536 (+) False LOC120546372
XR_005636871.1 lncRNA downstream 428356 26880721 ~ 26885536 (+) False LOC120546372
TU254247 lncRNA downstream 435342 26887707 ~ 26888304 (+) True G187672
TU254272 lncRNA downstream 464327 26916692 ~ 26918285 (+) True G187692
XM_039781022.1 mRNA upstream 8756 26413691 ~ 26431397 (+) True tfap2d
XM_039782617.1 mRNA upstream 129438 26298326 ~ 26310715 (+) True hadhb
XM_039782726.1 mRNA upstream 157145 26265189 ~ 26283008 (+) True gareml
XM_039780906.1 mRNA upstream 179258 26257475 ~ 26260895 (+) True atp5mj
XM_039782810.1 mRNA upstream 280717 26139409 ~ 26159436 (+) True esr2a
XM_039781353.1 mRNA downstream 64478 26516843 ~ 26596774 (+) True map3k5
XM_039782378.1 mRNA downstream 144919 26597284 ~ 26604825 (+) True lrp11
XM_039782379.1 mRNA downstream 161405 26613770 ~ 26619262 (+) True nup43
XM_039782204.1 mRNA downstream 167616 26619981 ~ 26628564 (+) False lats1
XM_039782205.1 mRNA downstream 167616 26619981 ~ 26624971 (+) False lats1
TU254022 other upstream 158785 26276695 ~ 26281368 (+) False gareml
TU253978 other upstream 409753 26028060 ~ 26030400 (+) False nudt14
unassigned_transcript_1083 other upstream 1220213 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253601 other upstream 1430746 25004019 ~ 25009407 (+) False lama2
TU253479 other upstream 1932340 24506913 ~ 24507813 (+) True G187094
XR_005637060.1 other downstream 204976 26657341 ~ 26657503 (+) True LOC120547357
TU254123 other downstream 230530 26682895 ~ 26685507 (+) True G187574
XR_005636891.1 other downstream 243065 26695430 ~ 26727545 (+) True LOC120546586
XR_005636894.1 other downstream 243065 26695430 ~ 26727545 (+) False LOC120546586
XR_005636892.1 other downstream 243065 26695430 ~ 26727545 (+) False LOC120546586

Expression Profile