RNA id: TU254535


Basic Information

Item Value
RNA id TU254535
length 322
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G187906
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 28365238 ~ 28377640 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagaaaggggaggtaaccttgctccttatgacctcataaggagaagattccagatcggccctcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcaccatttctagccactgggggaccataggcaggctgggggaactcacattaatgttaaaaaacctcataaagtgacattttcatgccatgggacctttaaactaccCCATAATAGGCGTACAACTTCAGCTGAAATGATTGgctgattaaacacttagttgattgacagaacagtttggatcgtttctAGTTTTCTAAAGTGTgaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254507 lncRNA upstream 168552 28177401 ~ 28196686 (+) True G187886
TU254499 lncRNA upstream 198911 28163132 ~ 28166327 (+) True G187878
TU254505 lncRNA upstream 236316 28128566 ~ 28128922 (+) True G187884
TU254493 lncRNA upstream 384215 27884718 ~ 27981023 (+) True G187872
TU254480 lncRNA upstream 576636 27788385 ~ 27788602 (+) True G187861
TU254549 lncRNA downstream 42352 28419992 ~ 28420262 (+) True G187915
TU254553 lncRNA downstream 94475 28472115 ~ 28545515 (+) True G187918
XR_005636861.1 lncRNA downstream 123089 28500729 ~ 28504391 (+) True LOC120546306
TU254578 lncRNA downstream 261814 28639454 ~ 28649123 (+) False afdna
TU254729 lncRNA downstream 495046 28872686 ~ 28875341 (+) True ttll2
XM_039781595.1 mRNA upstream 202618 28001397 ~ 28162620 (+) True man1a1
XM_039782621.1 mRNA upstream 614585 27673178 ~ 27750653 (+) True tbc1d32
XM_039780980.1 mRNA downstream 4042 28381682 ~ 28383084 (+) True ptrhd1
XM_039781942.1 mRNA downstream 15467 28393107 ~ 28466873 (+) True ncoa1
XM_039781943.1 mRNA downstream 15467 28393107 ~ 28465804 (+) False ncoa1
XM_039782328.1 mRNA downstream 161760 28539400 ~ 28649123 (+) True afdna
XM_039782329.1 mRNA downstream 291622 28669262 ~ 28689591 (+) True rfx6
unassigned_transcript_1088 other upstream 1383445 26981721 ~ 26981793 (+) True trnat-cgu_2
unassigned_transcript_1087 other upstream 1474882 26890284 ~ 26890356 (+) True trnaa-agc_23
unassigned_transcript_1086 other upstream 1478032 26887134 ~ 26887206 (+) True trnaa-agc_22
unassigned_transcript_1085 other upstream 1485005 26880161 ~ 26880233 (+) True trnaa-agc_21
unassigned_transcript_1084 other upstream 1485617 26879533 ~ 26879621 (+) True trnay-gua_55
TU254572 other downstream 261814 28639454 ~ 28649123 (+) False afdna
TU254581 other downstream 261814 28639454 ~ 28649123 (+) False afdna
unassigned_transcript_1089 other downstream 274962 28652602 ~ 28652684 (+) True trnal-cag_2
TU254737 other downstream 508850 28886490 ~ 28891364 (+) True G188063
TU254854 other downstream 756531 29134171 ~ 29136917 (+) True G188167

Expression Profile