RNA id: XM_039782702.1


Basic Information

Item Value
RNA id XM_039782702.1
length 1191
RNA type mRNA
GC content 0.41
exon number 6
gene id si:ch211-245h14.1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29292705 ~ 29312364 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCATCTCTGCTCATTCTCTTGAGAGCACGTTGCACGTCAAAGCAAAAGTGAAAGTGCTCCGCTGACAGGGAGGagctgctgttgtttttctggCACTCGTAAGACGGAAATGCCAGAGATATTACCAAGAAATTATCAATCTATTTCAAACATGGACAAGGCAGAGACGACTGTGCCGGGGAAAAACTTTTTTGTCTTCTTGGCGGGAAAAACTAATGATGCTCATCACGACTTTGTTGAAAAGTTTAAAGACGTTGGCCAAACTGAGGTGTGGTCTCCTGAAGAAAGTGACTACCTTCTGGTTTTCTGTCCCATCGCTTCACGAGTTGGAACGGACATCAGCGAGGCCCTGGACAAAATTCCAGGTGGTAAACCAGTAATTCTGGTGGTGATGCATCACACCTTCAGTCCTGAACATGTTGTAGCTCCAAGCATGAGACAGGTGAACAAACCGGCCGTCCTCCTCACCGTGGACTGTCTGTTCTATGAGCGCAACCTCCTGAAGTGTAACCGCAATGACATCGCGTGGTTTGACGTCCAGAAGGTTCTGGGAATTCCCCCACAGccCTCTTCCTTGAAAACATACCTCGGAAGTTggtggaggaagtactggaAGCCTGTTGTTATATTGGTGGTGATCATTAGGCTTGTGATCTATTTTGAGGAGATAAAGAAGTAAAGTGTATGAGGCCTGTCAAAAGCAtgcattacaaaaacaaaaggaatcCACTGTAATGGCAGTTTGCAGTATTATCACAATAAATGATTCTCGAAGGGACAAAATAAATATGCCATAGAATGCATGTGCAATcatttatataaatgtaataacagAAGAATGGtatcattgttattattgtaGTATAGTTGGGAAGGCTGATATAGATGTTTTTAAGCTGAATCTTTAGATCTCTTAGGCTGGCACAATATCATATATTGAGAATGTAAATCAGGGGCTACTACCAATGTTACTTCACAACCCCATTTATTGTGCTTTTTAGATCCAAGTTTTGTGGCATgtacatgttttaaatgtgtgtgtagcagAGTAGTATGTGGTCAAATCATATCATGTTTTGAATGATGATGACATAACATCCCTGCACAATGATTGCTGTTGTGTGCTCATTAAATATCAGGATTATATGTTTTTCTGTCATAAATCAATAAGTAAAAATGAATCAGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254861 lncRNA upstream 130812 29157305 ~ 29161893 (+) True G188172
TU254857 lncRNA upstream 149158 29138073 ~ 29143547 (+) False G188168
TU254855 lncRNA upstream 152083 29138073 ~ 29140622 (+) False G188168
TU254856 lncRNA upstream 152083 29138073 ~ 29140622 (+) True G188168
TU254851 lncRNA upstream 160910 29130213 ~ 29131795 (+) False trim54
TU254909 lncRNA downstream 79270 29384210 ~ 29384442 (+) True G188206
TU254911 lncRNA downstream 122485 29427425 ~ 29428647 (+) True G188208
TU254866 lncRNA downstream 138407 29443347 ~ 29447023 (+) True G188177
TU254998 lncRNA downstream 233235 29538175 ~ 29538452 (+) True G188281
TU255005 lncRNA downstream 271284 29576224 ~ 29578102 (+) True G188288
XM_039780911.1 mRNA upstream 71978 29196169 ~ 29220727 (+) True slc30a2
XM_039781557.1 mRNA upstream 160005 29110958 ~ 29132700 (+) False trim54
XM_039781556.1 mRNA upstream 160005 29110959 ~ 29132700 (+) True trim54
XM_039782550.1 mRNA upstream 367942 28917291 ~ 28924763 (+) True LOC120547117
XM_039782551.1 mRNA upstream 386325 28902376 ~ 28906380 (+) True gpr31
XM_039781412.1 mRNA downstream 10819 29315759 ~ 29371150 (+) True LOC120546480
XM_039782099.1 mRNA downstream 556434 29861374 ~ 29875824 (+) True LOC120546866
XM_039782100.1 mRNA downstream 571981 29876921 ~ 29882724 (+) True LOC120546867
XM_039782112.1 mRNA downstream 590485 29895425 ~ 29943833 (+) False LOC120546870
XM_039782109.1 mRNA downstream 590485 29895425 ~ 29906694 (+) False LOC120546870
TU254854 other upstream 155788 29134171 ~ 29136917 (+) True G188167
TU254737 other upstream 401341 28886490 ~ 28891364 (+) True G188063
unassigned_transcript_1089 other upstream 640021 28652602 ~ 28652684 (+) True trnal-cag_2
TU254572 other upstream 643582 28639454 ~ 28649123 (+) False afdna
TU254910 other downstream 114436 29419376 ~ 29420727 (+) True G188207
TU254981 other downstream 156909 29461849 ~ 29463874 (+) True G188268
TU255018 other downstream 340314 29645254 ~ 29645823 (+) True G188296
unassigned_transcript_1091 other downstream 1068726 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 1319540 30624480 ~ 30659281 (+) False G188352

Expression Profile