RNA id: TU255014


Basic Information

Item Value
RNA id TU255014
length 899
lncRNA type intronic
GC content 0.53
exon number 3
gene id G188294
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30071009 ~ 30072741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCGAGTTATCAGGACCCTCCCCCGGGGTCTGAACTTGTTAAACTGGTCCGAACCAGCTGATGTGCGATCGGAGGGGTGAGGTCAGTCTATCGCTGGAGCAACGGAGCGGCTGACAGCGTGCTAGACGTCCACAaacagtagtctcgctttgccagaccctcctccaaagtgcgccgaaggagggtctggctactccacatagcattcggggatgggaggaaaccgtgctctggtttagtggcatttctttaatccaatcagaatcgtcatgggtggcgctaaacTCCGCACGGAACCtttgcaaaatagtcgtgcgagagagaacagattggacagatagtctagctagctgtctcaatttacccttcagagatctgaggagcagtcaaccatagtcctcataaatccaccgcagcaccggagcaatcccagaagtggaacgtcaaggatatagactaacaaaCAGAGCTGGAGAACGGGCAGCACTCCTAGTTCACCCGGTCCCTCACTGTCATCGGCCCCCAGCGCAGGAACTCTATTCCTAGTCTTTCTGTCTTCACCGCCAGCAGCCCTAACCGGCTGCAAATGGACCCCCATCCTGTGAGTGCAATACCGGTGGCTTGGCAAACACCCCCGGCCCGACAACCAGAAACAAGCTCCGCTCCCCCAGAACACCATGCCACTCGCTCGGCTCTACTTTATCAGTTCAGAGTCTCAGCAatcaagtccagctgagactGATCAACTAGCAGAGTCTCTGACAGCAGCAACAATGTGGATCAGGTTGGTGGTGGTGGCTCATCGTTGTCTTTGTGGCTGTTGCAGCGCTCCTAATAATCACTGTGGCTGTCATCAGATGGAAGAGAGCTAAAGGgaacaaaacacagacagatgaAA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636970.1 lncRNA upstream 14585 30054358 ~ 30056424 (+) True LOC120546872
XR_005636971.1 lncRNA upstream 14585 30054358 ~ 30056424 (+) False LOC120546872
XR_005636973.1 lncRNA upstream 35808 30030900 ~ 30035201 (+) True LOC120546873
XR_005636972.1 lncRNA upstream 35808 30032681 ~ 30035201 (+) False LOC120546873
TU255056 lncRNA upstream 38048 29940206 ~ 30032961 (+) False LOC120546873
TU255086 lncRNA downstream 23981 30096722 ~ 30097235 (+) False btbd9
TU255087 lncRNA downstream 24985 30097726 ~ 30098348 (+) True G188344
TU255088 lncRNA downstream 26359 30099100 ~ 30099414 (+) True G188345
TU255092 lncRNA downstream 43969 30116710 ~ 30118259 (+) True G188347
TU255093 lncRNA downstream 44793 30117534 ~ 30118982 (+) False G188347
XM_039781362.1 mRNA upstream 48367 30012155 ~ 30022642 (+) True LOC120546436
XM_039782109.1 mRNA upstream 164315 29895425 ~ 29906694 (+) False LOC120546870
XM_039782101.1 mRNA downstream 707 30073448 ~ 30083063 (+) False LOC120546869
XM_039782107.1 mRNA downstream 707 30073448 ~ 30083063 (+) False LOC120546869
XM_039782104.1 mRNA downstream 707 30073448 ~ 30083063 (+) False LOC120546869
XM_039782103.1 mRNA downstream 707 30073448 ~ 30083063 (+) False LOC120546869
XM_039782102.1 mRNA downstream 3893 30076634 ~ 30083063 (+) True LOC120546869
TU255018 other upstream 425186 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 607135 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 650282 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 758645 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 300925 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 551739 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 721478 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 781234 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1425214 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile