RNA id: XR_005636972.1


Basic Information

Item Value
RNA id XR_005636972.1
length 1893
lncRNA type intronic
GC content 0.46
exon number 3
gene id LOC120546873
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 29940206 ~ 30035201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attaactctctctcctcttttaaaTCTGAAAGCTCCATCTAAAACATATCTCTGATGTAGTCCTTCTTTCTCCAGGTTGGGGGAGGATCCTCTTTGTGCCCGTGGGTTTAGCAGCTCTCATAATAATTGTTGTGGCGGTCAACATGTGGACGAGAGCTAAAGAGAAGAAAACACAGACGGAGGAAATCGCTGTGCGTTATGATGTAGATGATGATACAGTGAACTATGAAAACATCAGATCTCCTGATGGAGTTTGACCAACACTTCTGCCTCCATCAGACTCCACTGATCAACTCGTCACCTTTTACTGGACTAGTTCAAGACTGGAAATAACTAAAAGAATCATCAAGGCTTATTTCATTTTAGTCTGATGTATTTTCCTGCatcaattgtaaaaaaaaaatgttctcatCTGCAGCCAGTTGAGAACAGCAGCTGGATTTGAACTTCATTTAACTCTTGTTAACTTCCTGAAATAGTCTTCCAGTTGTGGATTTCAGAGCTGATTTTAAGATGTACTGCTTGTTGTTGAAGCTCCAGCAGcttgagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtacatgcgtgtgtgtgaatgtgtcccTAATAGATTCAGTAACAGTCTTCTCTTCATTCTGTGATTACAATATTGTAGTAAACTTGGGTGGTGGTTGTCTGTGAGGACTGTGACAACTAATCAAAGACTAATAAGATCCACCTGATCCACATTGTTGCTGCTGTCAGAGACTCTGCTAGTTGATCagtctcagctggacttgatTGCTGAGACACTGAACTGATAAAGTAGAGCCGAGCGAGTGGCATGGTGTTCTGGGGGAGGGGAGCATGTTTCTGGTTGTCAGGTTAGGGTTGTTTGCACGACCAAGCCACTGGTATTGCACTCACAGGATGGGGGTCTGTTCACAGCCGGTTAGGGCTGCCGGCGGTGAAGACAGAAAGACTAGGAATAGAGTTCCTGCGCTAGGGGCCGATGACAGTGAGGGACCGGGGGAACTAGGAGTGCTGCCTGTTCTCCAGCTCTGTttgatagtctatatccttgacgttccacttccaggattgcttcGGGACCGCAGGATGCATATATTTATGCCGATTTCTGTTTctttccgctttctttttttgttggaattttaaactccggtggatttctgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagactatctgtccaatcagagttttctctcgcacgactattttgcaaaGGCTCCGTACAGAGTTTAGCTCCGCCCATAACGATTCTGATTAAAGAAATGCcactaaaccagagcacgttttcctcccatccccgaatgctatgtggagtagccagaccgtCCTTCAGGGCAcattggaggagggtctggcaaagcgagactacggTTTGTGGACATCTGACACGCTGTCAGCCGCTCTGTTGCTCCAGCGCTGGACAGACCTCACCCCCAGGGGATCCGATCGCATATGAGCCGGTTCGGACCAGTGTCTAGTTTTGTCTGTAGGCCTATTTACTGTTTATATATGTACAATATGAGTGGGTTTTAAAGCTGCAGCAACAGTAACTGACTGGTGGTAAGCTGTGTGGGAGTTAGCTGATTGGTACGGGTGGATACAAGCCTGTCTAGCCCAGGTTAATTAAATGGGGGGCCGATAGTGTAAGTGATAGCCTAGTGTGTTGATCTGAGGTGAAAACAAGTGTGCAGTATCCTGCATTCAGTTCATTGTGGTTGAATGCGCTTTGCAAAGTTTGGCGTGTGTATTTGCATGTTGATTGCTGTGTGATTACCTGcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255073 lncRNA upstream 4876 30027137 ~ 30027805 (+) True G188333
TU255051 lncRNA upstream 47179 29928842 ~ 29985502 (+) True G188321
XR_005636974.1 lncRNA upstream 53614 29966970 ~ 29979067 (+) True LOC120546874
XR_005636975.1 lncRNA upstream 97195 29934594 ~ 29935486 (+) True LOC120546875
TU255055 lncRNA upstream 99821 29932550 ~ 29932860 (+) True G188323
XR_005636970.1 lncRNA downstream 19157 30054358 ~ 30056424 (+) True LOC120546872
XR_005636971.1 lncRNA downstream 19157 30054358 ~ 30056424 (+) False LOC120546872
TU255014 lncRNA downstream 35808 30071009 ~ 30072741 (+) True G188294
TU255086 lncRNA downstream 61521 30096722 ~ 30097235 (+) False btbd9
TU255087 lncRNA downstream 62525 30097726 ~ 30098348 (+) True G188344
XM_039781362.1 mRNA upstream 10039 30012155 ~ 30022642 (+) True LOC120546436
XM_039782109.1 mRNA upstream 125987 29895425 ~ 29906694 (+) False LOC120546870
XM_039782101.1 mRNA downstream 38247 30073448 ~ 30083063 (+) False LOC120546869
XM_039782107.1 mRNA downstream 38247 30073448 ~ 30083063 (+) False LOC120546869
XM_039782104.1 mRNA downstream 38247 30073448 ~ 30083063 (+) False LOC120546869
XM_039782103.1 mRNA downstream 38247 30073448 ~ 30083063 (+) False LOC120546869
XM_039782102.1 mRNA downstream 41433 30076634 ~ 30083063 (+) True LOC120546869
TU255018 other upstream 386858 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 568807 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 611954 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 720317 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 338465 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 589279 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 759018 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 818774 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1462754 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile