RNA id: TU255086



Basic Information


Item Value
RNA id TU255086
length 514
lncRNA type sense_over
GC content 0.36
exon number 1
gene id btbd9
representative False

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30084548 ~ 30097239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


agaattttATGAGTTACTATTTCCAAAAGAGAAGGATTTTATCCTTGaacaaactatttttttaagaaactgTCTTAAAATGACTCTAGTCCCTTTTCATACCATCAAGCTAACAAGAGTAGCAATCgagtattttttttcaaagtttggaaTTCAATTCTTCAAAGGTTTGCCAAAGCTGTGGAGCCAATGCATTCTGTGGCATTTATATGCAATTTGCACTTAATCCAGTTATGCATTTGCATATTAATGAATGGCTTTTGAGTATTTGTTGATAGGCTTTCACACCCGAAACCAAAATCGGCGGTCCTTATCTGGTGTGACTTTCTTTTGATGGATAAAATCCATGGctcgagagagaaaaaaaacctcaCAAAAATTAAACTTGAGTTAAGTGTCTTAATTTAGTATTTAAAGCActtgaatagcttagcacaaaggATTGGGAAAATCAATTAGGTTGTGTAATTTGGAGCAGTGGGGGCCCCGGACCAAATTAGGTATGCACTAGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU255014 lncRNA upstream 23981 30071009 ~ 30072741 (+) True G188294
XR_005636970.1 lncRNA upstream 40298 30054358 ~ 30056424 (+) True LOC120546872
XR_005636971.1 lncRNA upstream 40298 30054358 ~ 30056424 (+) False LOC120546872
XR_005636973.1 lncRNA upstream 61521 30030900 ~ 30035201 (+) True LOC120546873
XR_005636972.1 lncRNA upstream 61521 30032681 ~ 30035201 (+) False LOC120546873
TU255087 lncRNA downstream 491 30097726 ~ 30098348 (+) True G188344
TU255088 lncRNA downstream 1865 30099100 ~ 30099414 (+) True G188345
TU255092 lncRNA downstream 19475 30116710 ~ 30118259 (+) True G188347
TU255093 lncRNA downstream 20299 30117534 ~ 30118982 (+) False G188347
TU255094 lncRNA downstream 21376 30118611 ~ 30119041 (+) False G188347
XM_039782106.1 mRNA upstream 13659 30028950 ~ 30083063 (+) False LOC120546869
XM_039782101.1 mRNA upstream 13659 30073448 ~ 30083063 (+) False LOC120546869
XM_039782107.1 mRNA upstream 13659 30073448 ~ 30083063 (+) False LOC120546869
XM_039782104.1 mRNA upstream 13659 30073448 ~ 30083063 (+) False LOC120546869
XM_039782103.1 mRNA upstream 13659 30073448 ~ 30083063 (+) False LOC120546869
XM_039782116.1 mRNA downstream 2724 30099959 ~ 30115805 (+) True zfand3
XM_039782117.1 mRNA downstream 2724 30099959 ~ 30115805 (+) False zfand3
XM_039782120.1 mRNA downstream 2727 30099962 ~ 30115805 (+) False zfand3
XM_039782119.1 mRNA downstream 8219 30105454 ~ 30115805 (+) False zfand3
XM_039782122.1 mRNA downstream 28228 30125463 ~ 30323344 (+) True galnt14
TU255018 other upstream 450899 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 632848 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 675995 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 784358 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 276431 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 527245 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 696984 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 756740 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1400720 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile