RNA id: XM_039782115.1


Basic Information

Item Value
RNA id XM_039782115.1
length 3077
RNA type mRNA
GC content 0.52
exon number 11
gene id btbd9
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30084548 ~ 30097239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTGTCCGTTGACCCAGAATTGGTTTCCGTTGGTGTGATGTTGGAAGGGTTGTCAATTTGGTGCTGAATTTTTGCTACACAGTGGAGTGACAAACCACGACTGTACTTTTTTAAAATCATCTTTATTTAAACATAGGAGTGACTGAGAGCTGTTCGATGTGAGTCTAGCAGCCGTCGACCATGAGTAACAGCCACCCTCTGCGTCCACTGGCCTCGGTGTCGGAGATCGACCACATCCACTTGTTGTCGGAGCAGCTGGGAGCCCTGGTGCTCGGCGAGGAGTACAGCGATGTTACCTTCATCGTGGAGGGGAAGCGGTTCCCGGCGCACCGCGTCATCCTGGCAGCTCGCTGTCACTACTTCAGGGCCCTGCTGTATGGTGGGATGAAAGAGTCCCAGCCCCAGGCGGAGGTGAGTTTAGAGGAGACGCGGGCCGAAGCCTTCTCCATGCTGCTACACTACCTGTACACGGGCCGGGCCAGCCTCAGCTCCGCCCGGGAAGAGGTGCTGCTGGACTTCCTGGGCCTGGCTCACCGCTACGGCCTCCAGCCACTGGAGGACTCCACCTCAGAGTTCCTCCGCACCATCCTGCACACCAACAATGTCTGTCTGGTTTTTGACGTGGCCAGTCTGTACTCTCTGAGTGCGCTCAGTGCGGCCTGCTGTGCCTATATGGACAGACACGGACCTGAAGTGTTGAATTCTGACGGCTTTCTCTTGCTCTCCAAGACTGCTCTGCTGACCGTGGTCAGGCGGGACTCGTTTGCTGCCAGTGAGAAGGAGATCTTCCAGGCCTTGAGCCGTTGGTGCCGGCAGCACGAGGAGGGAGTCGACACCCAGGAAGTGATGTCAGCAGTGCGGCTGCCGCTCATGACTCTGACAGAGATGCTTAATGTGGTGCGACCGTCTGGCCTGCTGAGCCCAGACGACCTGCTGGATGCCATCAAGACCCGCTCTGAGAGCCGCAACATGGACCTTAACTACCGCGGCATGCTCATCCCAGAGGAGAACATTGCCACCATGAAGTATGGAGCTCAGGTGGTGAAAGGGGAGCTGAAGTCGGCGCTGCTGGACGGAGACACTCAGAACTACGACCTGGACCACGGCTTCTCCAGACATCCCATCGAGGATGACTGCCGGGCCGGGATCCAGGTCAAACTGGGCCAGTCGTCCATCATCAACCACATCCGCTTGCTGCTGTGGGACAGAGACAGTCGGTCCTACTCCTACTACATCGAGGTATCTATGGATGAGCTGGACTGGGTGCGTGTTGTGGACCATTCAAAGTACCTCTGCCGCTCTTGGCAGGAACTGTTCTTCACGCCACGAGTTTGCAGGTACATTCGCATTGTGGGAACACACAACACCGTCAACAAGGTCTTCCACCTCGTAGCTTTCGAATGCATGTTCACCAACCGCTCATTTACCCTGGAAAATGGACTTTTGGTGCCCAGTGAGAACGTGGCGACCATTGCGTCGTGTGCCAGTGTCATTGAAGGTGTGAGCCGTAGCAGGAATGCCTTGCTCAACGGCGACACGCGCAACTACGACTGGGATTCCGGCTACACCTGCCATCAGCTGGGCTCCGGGGCGATCGTCATCCAGCTGGCTCAGCCCTTCTCCATTGGATCTTTGAGGCTGCTGCTGTGGGACTGTGACGAGCGCTCCTACAGTTATTACATTGAAGTCTCCACCAACCAGCAGCAGTGGACCAAGGTGGTCGACCGCACCAGGGTACCATGTCGATCATGGCAGACGTTGAAGTTTGATAAGCAGCCTGCTTCCTTCATCCGTATTGTTGGGACTCACAACACTGCTAATGAGgtgTTCCACTGTGTTCACTTCGAGTGTCCAGCCCAGCTGGACACCGACGTTAAGGAAGGCAGCCCGGGCCAGGACTCGCCCGATTCTGGGTCCGCCTCCCCGCAGCCGCGGCCCTATCGGTCTTCACGCACACACGGCCTGCTGCCCTCCCAGCCCTCGCCCCCCTCGTCGTATTCCTCACAGTCCCATCATTAAGAGCGCCATCCTTCGGAAGGCGCCGAGCGGAAGGGAGACCTCGGGATGCCATTTTGCACAGCCTCCATCATCCAGACTGCACTGCTACAACGCTGCTAACGGCGATCGTCTCATTGTCATAACCCACGGTCCTTCTGTCTTAAGTGCAACATTAGAGACTGGTATATCTGTAGGAGCAGCGTTTAAGGGCTCCGGTCTTCCCAGTTCGGATACAGAAGGTTAGGTGTTGCATCCACTGGCTCAtacacttttgtgaaggtactTTTTTAAGCTACTAAGACTCAAGTTTTTTTCCCTTCAAAAGTCATCAAAGTGGGGTCCTTCTCCAAAGACGAGGCACACACTGAAATGTGGTTATACTGTACCACcaaagagaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaattttATGAGTTACTATTTCCAAAAGAGAAGGATTTTATCCTTGaacaaactatttttttaagaaactgTCTTAAAATGACTCTAGTCCCTTTTCATACCATCAAGCTAACAAGAGTAGCAATCgagtattttttttcaaagtttggaaTTCAATTCTTCAAAGGTTTGCCAAAGCTGTGGAGCCAATGCATTCTGTGGCATTTATATGCAATTTGCACTTAATCCAGTTATGCATTTGCATATTAATGAATGGCTTTTGAGTATTTGTTGATAGGCTTTCACACCCGAAACCAAAATCGGCGGTCCTTATCTGGTGTGACTTTCTTTTGATGGATAAAATCCATGGctcgagagagaaaaaaaacctcaCAAAAATTAAACTTGAGTTAAGTGTCTTAATTTAGTATTTAAAGCActtgaatagcttagcacaaaggATTGGGAAAATCAATTAGGTTGTGTAATTTGGAGCAGTGGGGGCCCCGGACCAAATTAGGTATGCACTAGGGCtgca

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K10481 BTBD9; BTB/POZ domain-containing protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255014 lncRNA upstream 11807 30071009 ~ 30072741 (+) True G188294
XR_005636970.1 lncRNA upstream 28124 30054358 ~ 30056424 (+) True LOC120546872
XR_005636971.1 lncRNA upstream 28124 30054358 ~ 30056424 (+) False LOC120546872
XR_005636973.1 lncRNA upstream 49347 30030900 ~ 30035201 (+) True LOC120546873
TU255087 lncRNA downstream 487 30097726 ~ 30098348 (+) True G188344
TU255088 lncRNA downstream 1861 30099100 ~ 30099414 (+) True G188345
TU255092 lncRNA downstream 19471 30116710 ~ 30118259 (+) True G188347
TU255093 lncRNA downstream 20295 30117534 ~ 30118982 (+) False G188347
TU255094 lncRNA downstream 21372 30118611 ~ 30119041 (+) False G188347
XM_039782106.1 mRNA upstream 1485 30028950 ~ 30083063 (+) False LOC120546869
XM_039782101.1 mRNA upstream 1485 30073448 ~ 30083063 (+) False LOC120546869
XM_039782107.1 mRNA upstream 1485 30073448 ~ 30083063 (+) False LOC120546869
XM_039782104.1 mRNA upstream 1485 30073448 ~ 30083063 (+) False LOC120546869
XM_039782103.1 mRNA upstream 1485 30073448 ~ 30083063 (+) False LOC120546869
XM_039782116.1 mRNA downstream 2720 30099959 ~ 30115805 (+) True zfand3
XM_039782117.1 mRNA downstream 2720 30099959 ~ 30115805 (+) False zfand3
XM_039782120.1 mRNA downstream 2723 30099962 ~ 30115805 (+) False zfand3
XM_039782119.1 mRNA downstream 8215 30105454 ~ 30115805 (+) False zfand3
XM_039782122.1 mRNA downstream 28224 30125463 ~ 30323344 (+) True galnt14
TU255018 other upstream 438725 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 620674 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 663821 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 772184 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 276427 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 527241 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 696980 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 756736 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1400716 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile