RNA id: TU255093


Basic Information

Item Value
RNA id TU255093
length 1449
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G188347
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30116710 ~ 30119041 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaactgctccaaacagctctattgtagtccagcctttacttccgcaactgacaagctagcagtacttaactgcgcatgtgcaactcccaacaaagacggaacagaagtgcgatgcctcactctgtagctaaaacggagagctcaacacaaagggtgaaaagaggagctgcagcaatgtgaaaatgaaaccacgtaaacctattctggtacaacctctaaatacaattatgaacctgaaaatgagcagaatatgagcactttaaggctGGGAAATGAACCAAAAGCTGGTTAACTTGATGTCGTAATAACACGTAAAAgcaaaaaatgcaaaacagagTTGGACAGCTGGACTCTTAACTCGCCACTTCAGCAACGCAATCAACCGCGATTTGGTTGTCTCCAGTTCAGTTAAGCAATTGGTGAACCTCATCCAGGTGTAAGAGCAAACGTGGACTTAAgacccccccacctcccccccgTGGACCCTGCGGAGGTTGTACACCGTATTGACATCACAGATTTCAAACTGCTCTTCGGTAATGATGTCTCGACGTGAATCCTTTTTATATTTGAGTtggttttcccttttttcttcaTACATTTTAGTTTGGTCATTGTTTCCGACCCTGCTCCAAATCAGCCTACGCAGTCTGAGTGCTTGGACTTTGTGCTGTGCATATTGTTCAGTTACacacttaattttttttctttgtttttcttctcaagGTGTATTCTACCAAAatcaatttcttttctttttttttctttttttttgtttgtttatgacaTTGCAgaagttgactttttttttttttgcaaatttaaagaaaaatgtttggcatttagCGCATATTGTTGGTGCATTAAAAGTATAAGTTGTGATTTTGTTTAATACAGGTACGTTATCTCCATGAAATGTACTTTGCAGCATCACTGGAAATGCGATTTGATGATGTTGAATtgtatatttttgcttttttttttcaatttggaGAAACATGAAATGGTAGATTTCCTTAAATGGCAGAAAAATCAgaaagcgttttttttttttttttttttttgcaagttatCTTTGGGGGAAAAGTTGATTCAGGTGGAGAGCCCTTATAACCACACACCACTTAACTATGCTAATCCTCATGCACAAGCTATTGTTCCTTCTCCCCCCTCACCTCTCCCCACCCCCTCTCATCTTTCCCAATGAGAACACGGCGAAGGATAAAGGGAGCTTTGGAGAAATGTCGTAGCTGGTTCTGATTttgatattttgaaaaaaaaaaaacgtgttccTTTGAGTGCTAATGAGAGATGGAAGAAATGGAATATCTTTCTGTACCTTTTTAGAGAAAAACAAATTATTTAACCTTATATCAGTTTGAGTTACTTACACCCTAGCATAGAGTGGCATATTTagttaaatgtataaaaaaagcaAGAACATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255088 lncRNA upstream 18120 30099100 ~ 30099414 (+) True G188345
TU255087 lncRNA upstream 19186 30097726 ~ 30098348 (+) True G188344
TU255086 lncRNA upstream 20299 30096722 ~ 30097235 (+) False btbd9
TU255014 lncRNA upstream 44793 30071009 ~ 30072741 (+) True G188294
XR_005636971.1 lncRNA upstream 61110 30054358 ~ 30056424 (+) False LOC120546872
TU255097 lncRNA downstream 206946 30325928 ~ 30326911 (+) False angel2
TU255096 lncRNA downstream 215646 30334628 ~ 30336202 (+) False angel2
TU255161 lncRNA downstream 229093 30348075 ~ 30354637 (+) False G188355
TU255162 lncRNA downstream 229093 30348075 ~ 30354637 (+) True G188355
TU255172 lncRNA downstream 274200 30393182 ~ 30398950 (+) True G188363
XM_039782116.1 mRNA upstream 1729 30099959 ~ 30115805 (+) True zfand3
XM_039782117.1 mRNA upstream 1729 30099959 ~ 30115805 (+) False zfand3
XM_039782120.1 mRNA upstream 1729 30099962 ~ 30115805 (+) False zfand3
XM_039782119.1 mRNA upstream 1729 30105454 ~ 30115805 (+) False zfand3
XM_039782115.1 mRNA upstream 20295 30084548 ~ 30097239 (+) True btbd9
XM_039782122.1 mRNA downstream 6481 30125463 ~ 30323344 (+) True galnt14
XM_039782123.1 mRNA downstream 6481 30125463 ~ 30323344 (+) False galnt14
XM_039782121.1 mRNA downstream 7285 30126267 ~ 30323344 (+) False galnt14
XM_039782129.1 mRNA downstream 205990 30324972 ~ 30334742 (+) False angel2
XM_039782127.1 mRNA downstream 206904 30325886 ~ 30334742 (+) True angel2
TU255018 other upstream 471711 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 653660 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 696807 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 805170 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 254684 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 505498 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 675237 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 734993 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1378973 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile