RNA id: TU255162


Basic Information

Item Value
RNA id TU255162
length 6528
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G188355
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 30348075 ~ 30354637 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agctgctgtctgtctgccagACCACTGATACTGTAACAGTAGGAAAgttacaataataatatttacTGAGGGTCACGTCTCCTACTATTGATCTCCACAGGAATACAAAACCACACCACATTCTCACACAGGGGACAAGCGCTctttaaaaagaataataatcagtctgtatttgtgtgtgtgtgtgtgtgtcaaacagAGCTCTGATGTGTTCCTCCAATCAGCTCTGTTTGATCGGTGAAGGCGCTGGCTGAATACTGTTACAGTGGTGTTcgattcccacacacacacacacacacacacacaggattttTTGCTGGTCTTATGTCAAGAGACTCAAGCGTTTGATAGAAATCGGACTGTTGTCCCTTTTGTTCGTTGCATCACAGAGCAGATCTGTCTGTTGTTAAATGTTCGTAACGAGAAAAATGTCTCCAGAAACATGagcaaaaaacaatgtttttgtcacagaaTATCAGAACTTTGTTTGATTCGGAAAACAAAACCAGTTAGTTAGTTGTGTAAGAAACCTGATGACCtattttttggatttttttttttttgcacaatgcACATGAGCAACTGCTCCAaacaacaaaaagtcaaaacttaAACCAAGCTATTCTTATCTGATTACACGTGTACACCGCTGAGGCACCGGGAGCTTCACGTGGacattttggtaacactttacttaaaggcatctacataagagtgacatgacactgtcaggaaccctaaccctaacttgtcatgacaaaaccgaatgacacttactgacagaagcgttatgtcataaacgtttatgacttgtttaaaatgtttatgacacgttcacgactgtcatgtcactcttatgtagacaCCTTCAAGTGTAACCGACATTTTCCATGTCCAGCgaatatttttatttctaaaattaTTCAGATATGTTGCCCTGAATTTGGTTCGGCTTTtgggtgggagaaaaaaaaattattattttttttgtcaattccATTTGTTCATACAAAAAGTAaagcaatttcttttttatccAGCAAAAATTTTAAATGTCATTATCATATGCAACAGGGAACTTTGGGATTTATTGTTTATAGCCTTTTTGTTGTCAGCTAGTGTGTAAAGTTTTTTATAGGACAGAGAGACCAGTTATCAGAATTCATGTTAAAATCATAAAGTTATATTAGAGTGGGCCTGCAGCGAGCCAAAACAGAGCTTTAAGATCTCCCACTAAAACCcactaaaatacattttaagttaCGGACCAGGATGGAGATGAGAAACGTGGTATCAGCACTTTGGGAACAAATCAAAGGCCATGAAAAAGTACACCTGCTACAACTACaaggtgttttctttttcttttctttttttaacaaattatatatatatatcattcaAAATGATAGTGTACAATCAATGAATCAAACCCAAATGTTTCCATAAAACAAGATTTGAGAAGTCAAACCACAAGCAGAaccttaaacaaaaaaaaaaaaaaaataagatgaaTTGTCAAGCACAGAAAAACTGACATAGAAACAGATTTCAGTCGCTACATTGAGTATCACACTTtcaggtttttttcttttttactgtgACGTGTCGCAGTTTCCGTGTCCCTGCTGAGCAGTCAGGTAGTTATCACTGTTGTTAGATCAAATCCCCAGAATTGCAGTTTTGATGTTTGTCTTAAAATCCAAAGTTGTAATGACAATCTGTGCATCGAGAGAAATGTGTCGACATTAGGTCCACGTGGTAACTGCAGAATCTCCATGTGTAtagttccaaaaaaaaaatatacacaaacatCAGAAATCCGGAAAAATGTAGTCCCAAGTTATGTTGCATCAATTCCTTGTCCGTTTGTCCACAACTGCGCTGTGAAAAATATTTTGAATACTCCCGGACGAGCCCCCATTGATGttacgacaaaaaaaaaagcaaatgcaGCTTTGTGCTTCTTCTGTATGCGAACACACATCACGCCTTTAGAAAGTATTAACACTTAAGCTTCGATACAAATATTAACATGTGGAGCTGGTTGCTTTGTGCCAGAGTGTCGGATATCCGTCTCTAGTCCACTGCTGGCCAAACATCAGAAACACAAAAAAGTATCCGGCTGGATCTACACAGAGGgaaagctgtgttttttttttggtgagtaGAATTATTCTTATAGCTCAAGATGTTTTTTCTTTGCAGATTTTTTAAAAGTGAATTGTTTTTGTGTAGATCGAGCCACAAACACCTTCCTACCTCCATCGTTTGAAATGTGGAAGACTGGGATTTccgtttttttttgtcctaACCTGCTCTCTAACACGGTGAGTgcatagcttttttttttttttttgttaacaaaAAGCTAGGAAGAAATGTTCAATtggcaacaaaacacacacttgcTCTGAAATCGAGAAAACACTGTGAAACATTCAaagaaatatcattaaacaatCAGATGACAATATTCAGCAGATGATTAATGTGACCAAAACACCAAAAGTAACATGATGCTGCTCACATTTCCCCCCTACACTTTACAGGTATTTAAAATAATCTTTGCTCCATTGGATATAAAGTTAAAGCTGCACCaggcatttgtaaaaaaaaatattaatacacCCATTGCATTTAAATCACAAAGTGGCTGCAGAGAACAACTGCAATTTGACTTTTAAATGGATAAAATCTATTTTTGGATTATTATTTATCTACTTTCTAGggtgtaggcctatatgtaggcTTGTGTgctgttatgtatgtgtgtgttgtctgtagcTGCTCTTAACTAATTGCCCCTTGTGTTGTTGAATTATGAGAACTTTCAGCATTTTGTGTTGAATTGATTTCCTTTCTAGTTAGATTATTGTGGAGACGACCTTTGTGAGCATTTCTTGGCACATTACCGCCACTAACTGTCAATCAGTGGAAAAGCACCTTATCCACTTCCTAGTTAGCGTGCATGAGAtactaacaaaacaaaatacaatgcTCTAGTGCATTTATGCCTTTTAAATAGAGCAGTATGTTTTATGTATAGCGACTAGCACTGCTACAGGACTTGTATTATTTCTGGGTGATCAAATCCTTCAGAAGTTTACGGGTGCCCTCTCAATGTCACTTTAAGTTGCCTGGTGCAGCTTCACTTGATTTTGGGAAACACCATTTTTTTCTTCGAGTTAATCCTTCAGATGAAAACTACAGAAGTCAGTCGTCACCAAGTATCCTAAAGTTTGAAGTAGCCAATCGTTTAGATTCAAATCATGTATTTAATCTGGACAAAATCCCCCATTTTCTTCTCCCACCCGTAAAATACCATTGAGCAAGGCATCTTAACCCTTAATTATGTGAATAGAGCTGGTCATGGTCCAGCAGAGGAGGGATGCGTTGTACTTATCAATATATCTTTTCTTAATTAAAACTAACCTGTTTAGTTGTCAGTGTGAAGGGTTAAAACTGTACAGTGCATATAAATTCTATTATACTGGACATGTGAGATGTCAAGATTCTTTGATTTCAAGCTTCTCAGCTGTGATTCATCGAAGGCCTCAACAGGAGAATCCAAAAAAACTAATCAAATTCAAACTTGATTAGATTTGTTTGGACAATCCTTACGATACATCACGCATACGAGCGTGAAACAATGTATACAGTACTAAATGTACTCTCATAGGTCACTTGGTACAGGGGCTTCTCAGCGCGGGAAAGACAATTCACCGAGCTGCTATGAGAACTTTCCTGACTCTTATTTGTCTCCTTCGAAAAAAGCACAGACTTTTTCTTAcgatttttgtttttagagtATTAAAATAAAGGGCATTCATCgttgaaataaaacatgatAAATCTCAATAATAGGAGTCATTTTGTGACCAAAACATCATCCTGGAGCTCTCTAAGGGTCCTTGACCTTGTTGTCCTGACTGCTTTTATTTGATATCCGCTGACAGCGTGCAGAGAGTGATAAATCCCTCTGCCAGATAAATCCGTCTTGAATGAGGCCTTTGTTACAGAGGGTTCACTCAGCCAACAACATCTGCCTTCACTCCTCGTTTGTCTGAGTGGACAAACTGGCTGCAGCTGAACTCGGACCAGCTAAGTGATTTGATATTCCAGCTGTTGGTGGAACAGCTGTAAAGGCAGCAGCCAGCTGGCCGACATTATGTAAGTTTATTGTGTGAACACATGGGTCAGCTACAGCTGAGTTTGGTCAACACATGCGGAGCTCCACTAGCCTTCTGCTAAGTTGTTTTAGAAAAACTAGTGATTGAATTTTGGTACATAAaattgaagtggggttgtatgaagtacttctccatagtcagtgtataactagtctatatcctcgatgttccacttctgggattgctccagtgcagCAGGAAATTCctccggatgcatgtattttcgcaaatatccgtttccttccgctttctttgtgttggagttctaaactctggtggatttatgaggactatggttaactgctcctcagatctctgcagggcgAATCCAGACAgccagctagactatctgtccaatctgagttttctatcgcacgttttttttttacatcggCACCGTGTGGAGCTaagtgacgattgtgattggtttaaagaaatgccaataaaccagagcaggtttctctcccatcccagaatgctgtgtggactcgccagaccctcctctgctccACAGCGTGTGGATGGGCTGGCGGTTGAAATACAAACTAACACTTTAAAACGCCAGagtcacacaacaacacaaacaacccaACCGATCGAGGCAGCAGCAGATcagcaactcctgtgttctgcgaggtaaaatttctgtttttgtcaaaagATGCCTGGCTTTAAAGAGAGCATAGATGGATACAAAGGCTTCAGtcggaaagggctgtctgacagcaaggtaaagtgGTGAAAAAATAGCATACACATAAActgatatagattttttttaggtgtctaaaatacatttacctgctgcccccgtccacagcagtacattgcttagcttccgtgttGGTACTCCGGTTTCCTTCTCCACATTAATTTAGTAGGTAATACAATTTAGTACTTCATACAACCcaactttaaaaacatcttAACTTTCACTTAAACTTCTTCTCATTTGTATTTGATATTTTTTGGTCTGTTTCAGTAGTTTCTTTCTAGCACTCACAAGGCTTGGATGGAAACAGGGCTGTGGTTATGTATTCAGTAATGTGTCAACAGagggcagaggaagaggaaaatgaGAAGGGAGGGAAGGCAGGAGGTTTGCCGCAGTGCTCTAATGATCCTTCACTGATCTTCCGCAGTAAATCATCTCTCTCCTtactcctcttctcttcttccttttcctctctATCGACTCTCATCTTTGATATTTCTGCATAAGTTATCGAACGCCCTCTCCTTATTCTACACTCATCCGCTCTGATCAATAGAATCTGCATGTGGAAGCCTACTCAGTCATCTTATTtaagctgctgttttttttgggaAAGTCCAAAGTGTAACTGAAGCATTACTTCTGAACATTCCTTTAGTGACCTTTTTCTTGAAGCCAAAGTGTTGCAGTAGTTGAGCAGGCATGTGAGAATAAAGTGGGATAACAAGACCTACACCTTTGAATCGGTCTTGGTCTCCCCTGCAGCCTCTGCCATGTTGGAAAAGTGAAATGAAAGTCATCCTCACTCCCATCCCttacaaaatacatttactgcAGTATTCAAATTGTGCTATAGAAGTGGCATTAGGATAACCAATCATTTTACATGCCAAAAGCACcaataaattaatgttttttttaagtcgtGTTCTGTGCAAAGAGAAGccaacatgtttttgttgtcaCTCTTCCATCATCGCTACCTGTCTCTTGATCACATATGAATATGTTGACTTATTTGTACCAACCCTTTCTTCTCTCACTTCACGATGTAGCTCTTTTCTGAGACATGTCGTCACTGAGCCCCCCCTCGGTGACAAGGGTCATAGAAATACTTGGTTACATCTGTTGTCACGAAGGACACGACAGCTGATTGAAATGTTGTAAACCTAGAAATACATTGATATCACTTCTTCTGATTTTATCCCAGGTCAGGGTAAGCGCTTCAGCTACTTGACTGAAATGTGTCAgtgggaaagaaagaagagcagcCACTCTCAGGTGTGTGATGATAAGGCGGTTGTCAAGGATTCATTGCTTGGGGAAAACGGGTATAAAAACCAGACCAACCAGACACTTTTTGTCTGATTCCTCGGCTTTAAAAAAGTTCTTCCTGTTCCGGCGCAGAAAGGTTCTTGAAACGTATTTTTGTGTCCACTTTGTCTGTGTAAAAATCGCTCTAGCTGCAGGGACTCCTCTCCTGCAAACGTTGGTGGCAGGTAGAGACCTTTCAGGATCAGGGTGGCGGAGAAGGTTGGACGGATTTGGGATGATTGGGAGGTGAAGAAGAGGATCAGATGCGGATCTGGTAGCCGTCGTTGAGAGTGCTGAGCTCCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255096 lncRNA upstream 11873 30334628 ~ 30336202 (+) False angel2
TU255097 lncRNA upstream 21164 30325928 ~ 30326911 (+) False angel2
TU255094 lncRNA upstream 229034 30118611 ~ 30119041 (+) False G188347
TU255093 lncRNA upstream 229093 30117534 ~ 30118982 (+) False G188347
TU255092 lncRNA upstream 229816 30116710 ~ 30118259 (+) True G188347
TU255172 lncRNA downstream 38545 30393182 ~ 30398950 (+) True G188363
TU255174 lncRNA downstream 47084 30401721 ~ 30430492 (+) True G188365
TU255183 lncRNA downstream 56986 30411623 ~ 30435797 (+) True G188367
TU255186 lncRNA downstream 56986 30411623 ~ 30435797 (+) False G188367
TU255197 lncRNA downstream 122120 30476757 ~ 30545263 (+) True G188374
XM_039782129.1 mRNA upstream 13333 30324972 ~ 30334742 (+) False angel2
XM_039782161.1 mRNA downstream 315119 30669756 ~ 30673973 (+) True LOC120546909
XM_039782159.1 mRNA downstream 439582 30794219 ~ 30812452 (+) True LOC120546905
XM_039782154.1 mRNA downstream 460216 30814853 ~ 30821281 (+) True LOC120546901
XM_039782158.1 mRNA downstream 472122 30826759 ~ 30830636 (+) True LOC120546904
XM_039782157.1 mRNA downstream 483094 30837731 ~ 30850277 (+) True LOC120546903
TU255018 other upstream 702252 29645254 ~ 29645823 (+) True G188296
TU254981 other upstream 884201 29461849 ~ 29463874 (+) True G188268
TU254910 other upstream 927348 29419376 ~ 29420727 (+) True G188207
TU254892 other upstream 1035711 29292741 ~ 29312364 (+) False si:ch211-245h14.1
unassigned_transcript_1091 other downstream 19029 30373666 ~ 30373738 (+) True trnat-ugu_4
TU255132 other downstream 269843 30624480 ~ 30659281 (+) False G188352
XR_005636985.1 other downstream 439582 30794219 ~ 30812143 (+) False LOC120546905
TU255105 other downstream 499338 30853975 ~ 30855364 (+) False G188352
XR_005637052.1 other downstream 1143318 31497955 ~ 31498174 (+) True LOC120547349

Expression Profile