RNA id: XM_039780976.1


Basic Information

Item Value
RNA id XM_039780976.1
length 1460
RNA type mRNA
GC content 0.66
exon number 2
gene id LOC120546196
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31776963 ~ 31782066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCGCGAACGCAGGTGCCAGGGTCCCCTACAACCATGCTAGCGACTCCGTGAGGCAGAAGCCCCGCCCGGTCGCACACAGACAGTCGCTGCTCAATTATGAGCCAGTCCCGGCTCTAAACAGCCAGGATACACCGGACGGTTACCGGCTGCCAGCGGAGGACAGGTTTCGGCTCGTTTGAAGCTGTTTGGATGAATTAAAGTTGGAGCGTACACGATGCTGAGCGCCGTTAAAATGGAGGGACACGAACATCCGGACTGGAGCGGCAGCAGCTACTACGGAGAGACCGAGtgttacGCCGCAGCAGGACACATGAATTCTGGCCCGCCCATGAACTCAATGAGCAGCTACATGAACGCGCCCGGCATGTCCGGCGCCGGCCACATGAGCGCGCACTACGCAAACCCGGTCGGGGTCAACCACTCGATGATGCACGCCGGCGTGTCGCAGAGCCCCGGCGCCGGCATACCGGGCCTGGGCGGCGCGCTGCCGCCGAGCATGAGCTCCATCAGCCCGCCGCCGTACGGGAACATGGCGAACATGATGAGCCCCGCGTACGGCCAGGCCTGCGGCGTCCGATCCAGGGAGCCCAAACCGTACCGGCGGAGCTACACGCACGCCAAGCCGCCGTACTCGTACATCTCCCTGATCACCATGGCCATCCAGCAGTCGGGCAGCAAGATGCTGACGCTGAACGAGATCTACCAGTGGATCACGGACCTGTTCCCGTTCTACCGGCAGAACCAGCAGCGGTGGCAGAACTCCATCCGCCACTCGCTCTCCTTCAACGACTGCTTCGTCAAGGTGCCGCGCATGCCGGACAAGCCGGGCAAGGGCTCCTTCTGGGCGCTGCACCCGGACTCGGGGAACATGTTCGAGAACGGCTGCTACCTGCGGAGGCAGAAGCGCTTCAGGAAAGTGCCCGGAACGGGCGACAAGGAGGCGCCGGGGAAGCCGGGCTCGGAGGCGGCCTCGGTCGCGGCCGGCAGCGCCGGCTCCGACTCCCCCCGCTCGTCTTCGGCCTCCTCTCCCCCGTCCTCGGACGCGAAAGCGACCGCGGCGGATTTCAAACCGTCCCGGGGTGAACCGTTGCCCTCCAGCCCCGTGCGCGTTCCCTCGCCGCTCGCTCACACCCAGCCCCTGTtctcccaccaccaccaccaccaccacccgcTGCTGCTGCACGaggccgccgccgccgccgctgcCGCCACGCACCTGAAGCCGGACCCGTACCACCACCAGCACCCCCACCAACACCACTACTCCTTCAACCACCCGTTCTCCATCAACAACCTCATGTCGGAGCCGGCGGTGCAGTACGGCGGCTACGGCTGCCCCGTGTCCGGCGCGCTGGTGGCGGCAAAAAGCGCCCTGGATCCCGGCGCTCACGCCGACAACAACTACTACCGCGGCGTGTACGCCAGACCCATTATGAACTCCTGAAATACTTCTTAGGG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255793 lncRNA upstream 24757 31674705 ~ 31752206 (+) True G188757
TU255807 lncRNA upstream 55676 31720092 ~ 31721287 (+) True G188768
TU255801 lncRNA upstream 65992 31708879 ~ 31710971 (+) True G188763
TU255799 lncRNA upstream 73316 31703031 ~ 31703647 (+) True G188761
TU255776 lncRNA upstream 179248 31597215 ~ 31597715 (+) True G188749
TU255825 lncRNA downstream 57740 31839806 ~ 31911299 (+) True G188785
TU255856 lncRNA downstream 136933 31918999 ~ 31927133 (+) True G188809
TU255863 lncRNA downstream 165132 31947198 ~ 31952652 (+) True G188816
TU255866 lncRNA downstream 186557 31968623 ~ 31968941 (+) True G188818
TU255867 lncRNA downstream 203246 31985312 ~ 31986086 (+) True G188819
XM_039781689.1 mRNA upstream 20045 31735570 ~ 31756918 (+) True cebpz
XM_039782544.1 mRNA upstream 72600 31620408 ~ 31704363 (+) True LOC120547115
XM_039782543.1 mRNA upstream 72939 31620408 ~ 31704024 (+) False LOC120547115
XM_039782030.1 mRNA upstream 162441 31607288 ~ 31614522 (+) True LOC120546816
XM_039781365.1 mRNA upstream 190014 31582418 ~ 31586949 (+) True LOC120546439
XM_039782524.1 mRNA downstream 84828 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA downstream 84828 31866894 ~ 31869296 (+) False nkx2.2b
XM_039782187.1 mRNA downstream 99399 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA downstream 99399 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782828.1 mRNA downstream 311885 32093951 ~ 32105660 (+) True crnkl1
TU255785 other upstream 166862 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 272735 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 275909 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 277635 31499109 ~ 31499328 (+) True LOC120547350
XR_005637052.1 other upstream 278789 31497955 ~ 31498174 (+) True LOC120547349
TU256147 other downstream 794412 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1546037 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1671930 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1859554 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1981399 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile