RNA id: TU255863


Basic Information

Item Value
RNA id TU255863
length 509
lncRNA type inter_gene
GC content 0.60
exon number 2
gene id G188816
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31947198 ~ 31952652 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGGAGAGGGGGCGGCTCACCAACAGCAGAGTCCCTCCGCCGCTCACACGGCTCATTACTCACACAGATCATACGGACAAAAGGCGGCAGGGAGGAGAAGTCACTAATGAGGAAAAGAGCAGATACTAAACGGAGTAATCAGGAGCCTCCTTACCAGCTTTTCTGCTGCTTGTGTGTCACTCAGAGACAAAGGGAAGAGATTAACCTGAGCAGAGCAGGAAGACAGACACCACAGCTGCTCGACCTCTGTCAGATGTTCTCGGTTGAACCACGAGCTCGGGGAAGCCCGTCTGTTCGTCCATGTCTCTGGTGAAGCTCAGGCCGACTGCCTCGCCGACGACCACCTCGGCCGTGGTGAACACCTCCAGGTCTCCCAGCACGTGACCCCCGACCGTCTTGCCCTCGGCGTCCGACAGGCAGATGTGGACATGGGCGTCCCGGTTCAGAGTGCCCACCAGGGAGACGATCTCGAACCGCCCGCTGAGCTGGATCACCTGAGGGGAGGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255856 lncRNA upstream 20065 31918999 ~ 31927133 (+) True G188809
TU255825 lncRNA upstream 35899 31839806 ~ 31911299 (+) True G188785
TU255793 lncRNA upstream 194992 31674705 ~ 31752206 (+) True G188757
TU255866 lncRNA downstream 15971 31968623 ~ 31968941 (+) True G188818
TU255867 lncRNA downstream 32660 31985312 ~ 31986086 (+) True G188819
TU256051 lncRNA downstream 190464 32143116 ~ 32143380 (+) True G188960
TU256062 lncRNA downstream 249610 32202262 ~ 32202553 (+) True G188971
XR_005637045.1 lncRNA downstream 276034 32228686 ~ 32229327 (+) True LOC120547295
XM_039782187.1 mRNA upstream 62396 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA upstream 62396 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782524.1 mRNA upstream 77902 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA upstream 77902 31866894 ~ 31869296 (+) False nkx2.2b
XM_039780976.1 mRNA upstream 165132 31776963 ~ 31782066 (+) True LOC120546196
XM_039782828.1 mRNA downstream 141299 32093951 ~ 32105660 (+) True crnkl1
XM_039782818.1 mRNA downstream 158938 32111590 ~ 32145910 (+) True cd109
XM_039782844.1 mRNA downstream 583083 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA downstream 583083 32535735 ~ 32569277 (+) False senp6a
XM_039781369.1 mRNA downstream 623804 32576456 ~ 32767003 (+) True myo6a
TU255816 other upstream 166160 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 337097 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 442970 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 446144 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 447870 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 623826 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1375451 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1501344 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1688968 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1810813 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile