RNA id: TU255867


Basic Information

Item Value
RNA id TU255867
length 775
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G188819
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 31985312 ~ 31986086 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCACAGAGTACAAGTACTGAGACCATGACATGCATTTTAAGTGAAAGAATAAGCAACATGCAGAGTAATGCACATAtagtattatataatatatagaatAAACAGTAGGGGGAAGACATGACTACGCTAAGATATATATGGACATGTGCAGCAGTAACAGTCGGCAGCGCTGGTatatgtataaaatatatagtgCAGGTTAATGCTAATGTAAgacaggggcgattctaggatctgaCCTTTGGGGgtgctcagcccctaatgaaaaGTTGATAGCAGTTAAGCTAGGGGGGTTCGGGGGCATGCTTCCgtaagatttttttgttttttaaacccttAAATCATGACTTCTTGTGAGTTTTGGGGAAAGAAATAGACAGATTGAGACATGCAATTATGACAAACTATCAACAGATTCAAggcatctgctgtgaaaaaagatgGAAACTACAAAGCATGATTATTGCAGCACACATACCCAGGGGCGttggactggggggggggggaacggGGACTGAAAAATATGCTAGAATTCATAGCTTTGGCTGTGTTGAATGACGGGCGAGACCCCCTCCGAGCGCCCCCCCATATTCAAAATAgggaataaaactgtacaactgtttaactagtattgataaagctgtACCCGTCCTTGCcctcccctgaatatgtatacctactcctaaaactactaatgccatgtaatgagtaagcaagaatcagtgaaagttgacacattaaatacttcaacaaacacatatggaattatgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255866 lncRNA upstream 16371 31968623 ~ 31968941 (+) True G188818
TU255863 lncRNA upstream 32660 31947198 ~ 31952652 (+) True G188816
TU255856 lncRNA upstream 58179 31918999 ~ 31927133 (+) True G188809
TU255825 lncRNA upstream 74013 31839806 ~ 31911299 (+) True G188785
TU255807 lncRNA upstream 264025 31720092 ~ 31721287 (+) True G188768
TU256051 lncRNA downstream 157030 32143116 ~ 32143380 (+) True G188960
TU256062 lncRNA downstream 216176 32202262 ~ 32202553 (+) True G188971
XR_005637045.1 lncRNA downstream 242600 32228686 ~ 32229327 (+) True LOC120547295
TU256071 lncRNA downstream 252397 32238483 ~ 32238824 (+) True G188980
TU256084 lncRNA downstream 330214 32316300 ~ 32319175 (+) True G188987
XM_039782187.1 mRNA upstream 100510 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA upstream 100510 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782524.1 mRNA upstream 116016 31866894 ~ 31869296 (+) True nkx2.2b
XM_039782525.1 mRNA upstream 116016 31866894 ~ 31869296 (+) False nkx2.2b
XM_039780976.1 mRNA upstream 203246 31776963 ~ 31782066 (+) True LOC120546196
XM_039782828.1 mRNA downstream 107865 32093951 ~ 32105660 (+) True crnkl1
XM_039782818.1 mRNA downstream 125504 32111590 ~ 32145910 (+) True cd109
XM_039782844.1 mRNA downstream 549649 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA downstream 549649 32535735 ~ 32569277 (+) False senp6a
XM_039781369.1 mRNA downstream 590370 32576456 ~ 32767003 (+) True myo6a
TU255816 other upstream 204274 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 375211 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 481084 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 484258 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 485984 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 590392 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 1342017 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 1467910 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1655534 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1777379 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile