RNA id: TU256141


Basic Information

Item Value
RNA id TU256141
length 293
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G189024
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32515355 ~ 32515647 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctgcatccatttagatgagagaagtgtatgcgcgttgtgcacacgctacattatggccaagcatgcgcccctaaaatagcatctgaataacgcgccactgactttagactagcgccactgactttagactagcgccactgactttagactagcgccactgactttagactagcgccactgactttagactagcgccactgactttagactagcaccactgactttagactagcgccactgactttagactagcaccactgactttagactagcaccactgactttagaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256137 lncRNA upstream 36863 32477854 ~ 32478492 (+) True G189020
TU256130 lncRNA upstream 59112 32454698 ~ 32456243 (+) True G189013
TU256127 lncRNA upstream 68216 32443638 ~ 32447139 (+) True G189012
TU256125 lncRNA upstream 72736 32442283 ~ 32442619 (+) True G189011
TU256084 lncRNA upstream 196180 32316300 ~ 32319175 (+) True G188987
XR_005637046.1 lncRNA downstream 9875 32525522 ~ 32535227 (+) True LOC120547301
TU256143 lncRNA downstream 9915 32525562 ~ 32535227 (+) False LOC120547301
TU256144 lncRNA downstream 48203 32563850 ~ 32570635 (+) True G189027
TU256146 lncRNA downstream 49885 32565532 ~ 32566361 (+) True G189029
TU256159 lncRNA downstream 134183 32649830 ~ 32650345 (+) True G189035
XM_039782818.1 mRNA upstream 369445 32111590 ~ 32145910 (+) True cd109
XM_039782828.1 mRNA upstream 409695 32093951 ~ 32105660 (+) True crnkl1
XM_039782187.1 mRNA upstream 630553 31881465 ~ 31884802 (+) True nkx2.4b
XM_039782188.1 mRNA upstream 630553 31881465 ~ 31884802 (+) False nkx2.4b
XM_039782525.1 mRNA upstream 646059 31866894 ~ 31869296 (+) False nkx2.2b
XM_039782844.1 mRNA downstream 20088 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA downstream 20088 32535735 ~ 32569277 (+) False senp6a
XM_039781369.1 mRNA downstream 60809 32576456 ~ 32767003 (+) True myo6a
XM_039780909.1 mRNA downstream 450550 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA downstream 460307 32975954 ~ 33041169 (+) True mei4
TU255816 other upstream 734317 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 905254 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1011127 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1014301 31500835 ~ 31501054 (+) True LOC120547351
XR_005637053.1 other upstream 1016027 31499109 ~ 31499328 (+) True LOC120547350
TU256147 other downstream 60831 32576478 ~ 32622264 (+) False myo6a
TU256417 other downstream 812456 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 938349 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 1125973 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1247818 33763465 ~ 33763626 (+) True LOC120547364

Expression Profile