RNA id: TU256158


Basic Information

Item Value
RNA id TU256158
length 456
lncRNA type sense_over
GC content 0.31
exon number 2
gene id G189034
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32758841 ~ 32761089 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTAGATGTGCGCCTGTTCCgacactgaaccaacccggccccCGTATAAAGCTCTTCAGAaggtttatttttgtgtttcagTTTTAAACAGAGGTGGAAAGGCAAAAACATattccacttaagtaaaagtattattaCTTTGAggaacttttacttaagtatgaGTAAAATTACCGGTATagaaatctactcaagtaaaagtaaaaagtagctcatttaaaatgtactcagagtaaaagttacttagttacttttaaACAGCCGGGGAGATATACTTTatattcatacttattaaatatctttatacttaatatatttatttaattaactcAGTCTTTTGCGATTTCATAAGGAcacaaagccaaaaaaaaaaggagaaaagtgaagaaaaaaacttttgttgACAGATATAATTTTGGGTTATacttcacttgaaggtatctacataagagtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256162 lncRNA upstream 2888 32754590 ~ 32755953 (+) True G189037
TU256159 lncRNA upstream 108496 32649830 ~ 32650345 (+) True G189035
TU256144 lncRNA upstream 188206 32563850 ~ 32570635 (+) True G189027
TU256146 lncRNA upstream 192480 32565532 ~ 32566361 (+) True G189029
XR_005637046.1 lncRNA upstream 223614 32525522 ~ 32535227 (+) True LOC120547301
TU256261 lncRNA downstream 204185 32965274 ~ 32965502 (+) True G189114
TU256263 lncRNA downstream 204749 32965838 ~ 32966364 (+) False mei4
TU256264 lncRNA downstream 210921 32972010 ~ 32972221 (+) True G189117
TU256272 lncRNA downstream 281809 33042898 ~ 33043227 (+) True G189125
TU256278 lncRNA downstream 317018 33078107 ~ 33078410 (+) True G189131
XM_039782844.1 mRNA upstream 189564 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA upstream 189564 32535735 ~ 32569277 (+) False senp6a
XM_039782818.1 mRNA upstream 612931 32111590 ~ 32145910 (+) True cd109
XM_039782828.1 mRNA upstream 653181 32093951 ~ 32105660 (+) True crnkl1
XM_039782188.1 mRNA upstream 874039 31881465 ~ 31884802 (+) False nkx2.4b
XM_039780909.1 mRNA downstream 205108 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA downstream 214865 32975954 ~ 33041169 (+) True mei4
XM_039780910.1 mRNA downstream 214865 32975954 ~ 33009771 (+) False mei4
XM_039782728.1 mRNA downstream 338280 33099369 ~ 33127591 (+) True nt5e
XM_039781460.1 mRNA downstream 440316 33201405 ~ 33228839 (+) True bub1
TU256147 other upstream 136577 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 977803 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1148740 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1254613 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1257787 31500835 ~ 31501054 (+) True LOC120547351
TU256417 other downstream 567014 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 692907 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 880531 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1002376 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 1004412 33765501 ~ 33771373 (+) False LOC120546444

Expression Profile