RNA id: TU256159


Basic Information

Item Value
RNA id TU256159
length 285
lncRNA type intronic
GC content 0.51
exon number 2
gene id G189035
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32649830 ~ 32650345 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccaaagtcccccccaaagggacttaccatctccaacagaaaacactgttcaccaactgctccaaacagctctattgtagtccagcctttacttcagagacagacgtggtcactttggaacacacgttataatgctcgcctagctgctagcatggcacgccctcatactctgcttctgactggctagtagtccttacctaggtactgtcagggcacaccctcatactctgcttctgactggctagtagtccttacctaggtactgtcagggcacgccctcatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256144 lncRNA upstream 79195 32563850 ~ 32570635 (+) True G189027
TU256146 lncRNA upstream 83469 32565532 ~ 32566361 (+) True G189029
XR_005637046.1 lncRNA upstream 114603 32525522 ~ 32535227 (+) True LOC120547301
TU256143 lncRNA upstream 114603 32525562 ~ 32535227 (+) False LOC120547301
TU256141 lncRNA upstream 134183 32515355 ~ 32515647 (+) True G189024
TU256162 lncRNA downstream 104245 32754590 ~ 32755953 (+) True G189037
TU256158 lncRNA downstream 108496 32758841 ~ 32761089 (+) True G189034
TU256261 lncRNA downstream 314929 32965274 ~ 32965502 (+) True G189114
TU256263 lncRNA downstream 315493 32965838 ~ 32966364 (+) False mei4
TU256264 lncRNA downstream 321665 32972010 ~ 32972221 (+) True G189117
XM_039782844.1 mRNA upstream 80553 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA upstream 80553 32535735 ~ 32569277 (+) False senp6a
XM_039782818.1 mRNA upstream 503920 32111590 ~ 32145910 (+) True cd109
XM_039782828.1 mRNA upstream 544170 32093951 ~ 32105660 (+) True crnkl1
XM_039782187.1 mRNA upstream 765028 31881465 ~ 31884802 (+) True nkx2.4b
XM_039780909.1 mRNA downstream 315852 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA downstream 325609 32975954 ~ 33041169 (+) True mei4
XM_039780910.1 mRNA downstream 325609 32975954 ~ 33009771 (+) False mei4
XM_039782728.1 mRNA downstream 449024 33099369 ~ 33127591 (+) True nt5e
XM_039781460.1 mRNA downstream 551060 33201405 ~ 33228839 (+) True bub1
TU256147 other upstream 27566 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 868792 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1039729 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1145602 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1148776 31500835 ~ 31501054 (+) True LOC120547351
TU256417 other downstream 677758 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 803651 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 991275 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 1113120 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 1115156 33765501 ~ 33771373 (+) False LOC120546444

Expression Profile