RNA id: TU256261


Basic Information

Item Value
RNA id TU256261
length 229
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G189114
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 32965274 ~ 32965502 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCAGCGTGGGGATGTAGAACGCGCCGAACGTGGAGTAGATGGTGTAGAAAATGTGGTCCGTGTTCACGTTGCAGCTCGTCATCTCCTCCGCCTTCACCTGGCGCCAGAAGAACGGCGGCAGCGAGATGGAGATGGCGATCACCCAGGCGGTGGCGATCATCCCGGCGGCGCGCCCCATCGTGCGCTTCTTGGAGTACTCCACGGCGTCCGTGATGGCCCAGTAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256158 lncRNA upstream 204185 32758841 ~ 32761089 (+) True G189034
TU256162 lncRNA upstream 209321 32754590 ~ 32755953 (+) True G189037
TU256159 lncRNA upstream 314929 32649830 ~ 32650345 (+) True G189035
TU256144 lncRNA upstream 394639 32563850 ~ 32570635 (+) True G189027
TU256146 lncRNA upstream 398913 32565532 ~ 32566361 (+) True G189029
TU256263 lncRNA downstream 336 32965838 ~ 32966364 (+) False mei4
TU256264 lncRNA downstream 6508 32972010 ~ 32972221 (+) True G189117
TU256272 lncRNA downstream 77396 33042898 ~ 33043227 (+) True G189125
TU256278 lncRNA downstream 112605 33078107 ~ 33078410 (+) True G189131
TU256281 lncRNA downstream 127215 33092717 ~ 33093335 (+) True G189134
XM_039781369.1 mRNA upstream 198271 32576456 ~ 32767003 (+) True myo6a
XM_039782844.1 mRNA upstream 395997 32535735 ~ 32569277 (+) True senp6a
XM_039782846.1 mRNA upstream 395997 32535735 ~ 32569277 (+) False senp6a
XM_039782818.1 mRNA upstream 819364 32111590 ~ 32145910 (+) True cd109
XM_039782828.1 mRNA upstream 859614 32093951 ~ 32105660 (+) True crnkl1
XM_039780909.1 mRNA downstream 695 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA downstream 10452 32975954 ~ 33041169 (+) True mei4
XM_039780910.1 mRNA downstream 10452 32975954 ~ 33009771 (+) False mei4
XM_039782728.1 mRNA downstream 133867 33099369 ~ 33127591 (+) True nt5e
XM_039781460.1 mRNA downstream 235903 33201405 ~ 33228839 (+) True bub1
TU256147 other upstream 343010 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1184236 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1355173 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1461046 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1464220 31500835 ~ 31501054 (+) True LOC120547351
TU256417 other downstream 362601 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 488494 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 676118 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 797963 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 799999 33765501 ~ 33771373 (+) False LOC120546444

Expression Profile