RNA id: TU256272


Basic Information

Item Value
RNA id TU256272
length 330
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G189125
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33042898 ~ 33043227 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacagggtcgtgggggggctggagccaatcccagcatacgtcgggcgaaaggcggggtacaccccggacaggtcgccagtccatcgcagggccacacatagacgaacaaccactcactcacacatgcacacctacggacaatttagggacaccaataaacctagcccgcatgtctttggtcggcgggaggaagccggagtacccggagagaacccacacagacacggggagaacatgcaaactccacacagaaaggccgggccaaccggggtacgaacccacaaccttcttgctgtgaggcgacagtgctaaccaccgcaccaccgtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256264 lncRNA upstream 70677 32972010 ~ 32972221 (+) True G189117
TU256263 lncRNA upstream 76534 32965838 ~ 32966364 (+) False mei4
TU256261 lncRNA upstream 77396 32965274 ~ 32965502 (+) True G189114
TU256158 lncRNA upstream 281809 32758841 ~ 32761089 (+) True G189034
TU256162 lncRNA upstream 286945 32754590 ~ 32755953 (+) True G189037
TU256278 lncRNA downstream 34880 33078107 ~ 33078410 (+) True G189131
TU256281 lncRNA downstream 49490 33092717 ~ 33093335 (+) True G189134
TU256283 lncRNA downstream 50622 33093849 ~ 33094280 (+) True G189136
TU256295 lncRNA downstream 91294 33134521 ~ 33146593 (+) True G189143
TU256300 lncRNA downstream 97376 33140603 ~ 33143547 (+) True G189147
XM_039780909.1 mRNA upstream 1729 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA upstream 1729 32975954 ~ 33041169 (+) True mei4
XM_039780910.1 mRNA upstream 33127 32975954 ~ 33009771 (+) False mei4
XM_039781369.1 mRNA upstream 275895 32576456 ~ 32767003 (+) True myo6a
XM_039782844.1 mRNA upstream 473621 32535735 ~ 32569277 (+) True senp6a
XM_039782728.1 mRNA downstream 56142 33099369 ~ 33127591 (+) True nt5e
XM_039781460.1 mRNA downstream 158178 33201405 ~ 33228839 (+) True bub1
XM_039781464.1 mRNA downstream 158178 33201405 ~ 33228839 (+) False bub1
XM_039781463.1 mRNA downstream 158178 33201405 ~ 33228839 (+) False bub1
XM_039781461.1 mRNA downstream 158178 33201405 ~ 33228839 (+) False bub1
TU256147 other upstream 420634 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1261860 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1432797 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1538670 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1541844 31500835 ~ 31501054 (+) True LOC120547351
TU256417 other downstream 284876 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 410769 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 598393 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 720238 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 722274 33765501 ~ 33771373 (+) False LOC120546444

Expression Profile