RNA id: TU256278


Basic Information

Item Value
RNA id TU256278
length 304
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G189131
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33078107 ~ 33078410 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagactccatgtaaataatcaggacttttagcgtgtatggagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttggcgtgtgtagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccacatgtaaatgggtgaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256272 lncRNA upstream 34880 33042898 ~ 33043227 (+) True G189125
TU256264 lncRNA upstream 105886 32972010 ~ 32972221 (+) True G189117
TU256263 lncRNA upstream 111743 32965838 ~ 32966364 (+) False mei4
TU256261 lncRNA upstream 112605 32965274 ~ 32965502 (+) True G189114
TU256158 lncRNA upstream 317018 32758841 ~ 32761089 (+) True G189034
TU256281 lncRNA downstream 14307 33092717 ~ 33093335 (+) True G189134
TU256283 lncRNA downstream 15439 33093849 ~ 33094280 (+) True G189136
TU256295 lncRNA downstream 56111 33134521 ~ 33146593 (+) True G189143
TU256300 lncRNA downstream 62193 33140603 ~ 33143547 (+) True G189147
TU256307 lncRNA downstream 74815 33153225 ~ 33153466 (+) True G189152
XM_039780909.1 mRNA upstream 36938 32966197 ~ 33041169 (+) False mei4
XM_039780908.1 mRNA upstream 36938 32975954 ~ 33041169 (+) True mei4
XM_039780910.1 mRNA upstream 68336 32975954 ~ 33009771 (+) False mei4
XM_039781369.1 mRNA upstream 311104 32576456 ~ 32767003 (+) True myo6a
XM_039782844.1 mRNA upstream 508830 32535735 ~ 32569277 (+) True senp6a
XM_039782728.1 mRNA downstream 20959 33099369 ~ 33127591 (+) True nt5e
XM_039781460.1 mRNA downstream 122995 33201405 ~ 33228839 (+) True bub1
XM_039781464.1 mRNA downstream 122995 33201405 ~ 33228839 (+) False bub1
XM_039781463.1 mRNA downstream 122995 33201405 ~ 33228839 (+) False bub1
XM_039781461.1 mRNA downstream 122995 33201405 ~ 33228839 (+) False bub1
TU256147 other upstream 455843 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1297069 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1468006 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1573879 31504009 ~ 31504228 (+) True LOC120547352
XR_005637054.1 other upstream 1577053 31500835 ~ 31501054 (+) True LOC120547351
TU256417 other downstream 249693 33328103 ~ 33331713 (+) False pex7
TU256470 other downstream 375586 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 563210 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 685055 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 687091 33765501 ~ 33771373 (+) False LOC120546444

Expression Profile