RNA id: TU256463


Basic Information

Item Value
RNA id TU256463
length 1509
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G189263
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33441481 ~ 33444052 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACATTGACAAAAATCACTTTATTTGAGTCTGTGAATGTCATTTTTTAGTTTAAAAGAGACACTGCAATTTTACTGGCATAGATACCAACCAATGGCTTTGTTTTGGCATTCTGCTTTACAAAAGGAAAACACTTTCACTCTGTATGGCCCTTTTGATAACACTAAATACTTTAGACTTTGTTATTAATTCAGTTAGGCCTTTCGTTCCATTGCCCAGGTCAAACTAAACGTTTATTTAGACATTCAAACTGTAAAATACAGTCAGTTTATTTGTCTGTCCTCATCTGGTTACACTGAATCTTGGGAAAAATGACAGTGACAACACTTTCTGGATGCACCAGTTGGGACAAACAAAAGAAAGGTGCAGAGGCACAGTTGGATTTCatctacgcacacacacacctacccaaATAACCCCACACACACCTTCTGCACATCCTCAACTTTAGCTAGCATTCTTtccgttcttcttcttctttttctttggtGTTTGCTTTTTGGAGGACTCAGCATTGGAGGAGGCAGTTGCTTTAGGTGTGTCATTGGAGGGTGGAGCTGAGTCTGACTTGGTTGGTGCTTCCTTTGGTACTTTCACTGGTTCAGCCTGGACCTTCTCGTCTTCCACTGGGACCACTGGGTTGACCTCATCGGCCTTGACCAAGATCTCAGCCTCTGCTGGTTCTGGTTTTGGGTTTGTTGGTGGATCAATCTTGACCTTCTCAGGCTCAGATGTCGGTACCGGTTCAGCAGGTTGCTGCTGGATCGCCTTATCTGGTTTCACCTCTTTCTCCTCGACCTGGGTTTGAACTTTTACAGCTTCTGGTTTTGTCTCTGTTGGTATCACATCAGCTGTGTTCTCCACAGGTGTCGACATGGCTGGCTTTGAAACCTCCTCAACTTTATCCGGCTGTGGGAGAACTGATTCTGCTGCCTCTGCTTTGACATCGGCCACCTGCTGAGGGACTGAAACCGCCTCCTCTTTAACCTGAGCTTTGGTCTTGAACTGGGCAAACGCAGAAGACATCAAATCTTCTTCAGTGTCTTCATCATCATTGTCCTCTTCGTCATTGTCGGACGGTTTGGCCAAAAGGGCAGCTGCAATCTCCTGCAGCTTGGCCTGCTCCTCCTTTAGACGGGACATGCCCTCTGTTAGGACTGGGTCCTCCTTCTGTAGCTCCTGAAGCTCTTGGAGCTCCACAGGGGTCAGAATGGCAGATTTGTCAGGATCCTCTGGGGTGGGGATTTCATCAACTTTAGAACTGCCGAAGACCTTTGATGGGATGTTGGAGTTAGTCTGGCGGATTTCCTTGATCTTTTCATAGAGGATTGCCCTCTCGCTCTGTAGGGCATTACACAACCTCTCCAGCTTCTGAATCTTCAGGACGAACACGTCGTACTCCTTCATCTTCATGGTTCTCTCCTCCATCATGTCAGTCAGAGCCTTGTTGCAGTTCTCAAACCTTGTCTTCCACAGATTTGACTCTTTGTCCATTTTCTTCATCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256461 lncRNA upstream 5350 33435785 ~ 33436131 (+) True G189262
TU256454 lncRNA upstream 40904 33400043 ~ 33400577 (+) False LOC120546192
TU256419 lncRNA upstream 54529 33382830 ~ 33386952 (+) True pex7
TU256415 lncRNA upstream 88958 33293820 ~ 33352523 (+) True G189228
TU256404 lncRNA upstream 152544 33287861 ~ 33288937 (+) True G189218
TU256472 lncRNA downstream 50589 33494641 ~ 33494928 (+) True G189271
TU256492 lncRNA downstream 140930 33584982 ~ 33585281 (+) True G189289
TU256524 lncRNA downstream 241145 33685197 ~ 33685556 (+) False G189309
TU256527 lncRNA downstream 299456 33743508 ~ 33762216 (+) True G189311
TU256536 lncRNA downstream 303967 33748019 ~ 33751624 (+) True G189318
XM_039780971.1 mRNA upstream 25395 33399801 ~ 33416086 (+) True LOC120546192
XM_039782540.1 mRNA upstream 54492 33328092 ~ 33386989 (+) False pex7
XM_039782541.1 mRNA upstream 54492 33328092 ~ 33386989 (+) False pex7
XM_039782542.1 mRNA upstream 54492 33328092 ~ 33386989 (+) False pex7
XM_039780901.1 mRNA upstream 154541 33279911 ~ 33286940 (+) True LOC120546153
XM_039780949.1 mRNA downstream 185748 33629800 ~ 33666253 (+) True LOC120546181
XM_039781371.1 mRNA downstream 321301 33765353 ~ 33771402 (+) True LOC120546444
XM_039781373.1 mRNA downstream 402392 33846444 ~ 33856412 (+) True LOC120546446
XM_039781945.1 mRNA downstream 415100 33859152 ~ 34000536 (+) True LOC120546766
XM_039781947.1 mRNA downstream 564344 34008396 ~ 34013448 (+) False LOC120546767
TU256417 other upstream 109768 33328103 ~ 33331713 (+) False pex7
TU256147 other upstream 819217 32576478 ~ 32622264 (+) False myo6a
TU255816 other upstream 1660443 31777029 ~ 31781038 (+) False LOC120546196
TU255785 other upstream 1831380 31606054 ~ 31610101 (+) False LOC120546816
XR_005637055.1 other upstream 1937253 31504009 ~ 31504228 (+) True LOC120547352
TU256470 other downstream 9944 33453996 ~ 33458768 (+) True G189269
TU256525 other downstream 197568 33641620 ~ 33685556 (+) True G189309
XR_005637066.1 other downstream 319413 33763465 ~ 33763626 (+) True LOC120547364
TU256542 other downstream 321449 33765501 ~ 33771373 (+) False LOC120546444
TU256516 other downstream 415094 33859146 ~ 33860403 (+) False LOC120546766

Expression Profile