RNA id: TU256514


Basic Information

Item Value
RNA id TU256514
length 931
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G189299
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33814904 ~ 33827371 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgttgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtttgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtttgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcttgtgtgtgtgtgtgtgtgtttgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtttgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctctgtgtgtctgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtctgtctctgtctgtgtgtgtgtgtgtgtctgtgtctgtctgtctgtgtctgtctctgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtctgttgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256547 lncRNA upstream 41795 33772638 ~ 33773109 (+) True G189328
TU256527 lncRNA upstream 52688 33743508 ~ 33762216 (+) True G189311
TU256543 lncRNA upstream 57834 33756783 ~ 33757070 (+) True G189325
TU256523 lncRNA upstream 62227 33752048 ~ 33752677 (+) True G189308
TU256536 lncRNA upstream 63280 33748019 ~ 33751624 (+) True G189318
TU256545 lncRNA downstream 3581 33830952 ~ 33831603 (+) True G189327
TU256563 lncRNA downstream 12350 33839721 ~ 33884998 (+) True G189339
TU256566 lncRNA downstream 26307 33853678 ~ 33855469 (+) False LOC120546446
TU256568 lncRNA downstream 35834 33863205 ~ 33876447 (+) True G189344
TU256503 lncRNA downstream 59044 33886415 ~ 33943562 (+) False G189294
XM_039781371.1 mRNA upstream 43502 33765353 ~ 33771402 (+) True LOC120546444
XM_039780949.1 mRNA upstream 148651 33629800 ~ 33666253 (+) True LOC120546181
XM_039780971.1 mRNA upstream 398818 33399801 ~ 33416086 (+) True LOC120546192
XM_039782541.1 mRNA upstream 427915 33328092 ~ 33386989 (+) False pex7
XM_039781373.1 mRNA downstream 19073 33846444 ~ 33856412 (+) True LOC120546446
XM_039781945.1 mRNA downstream 31781 33859152 ~ 34000536 (+) True LOC120546766
XM_039781947.1 mRNA downstream 181025 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA downstream 183569 34010940 ~ 34013448 (+) True LOC120546767
XM_039781374.1 mRNA downstream 191260 34018631 ~ 34035953 (+) True LOC120546447
TU256542 other upstream 43531 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 51278 33763465 ~ 33763626 (+) True LOC120547364
TU256525 other upstream 129348 33641620 ~ 33685556 (+) True G189309
TU256470 other upstream 356136 33453996 ~ 33458768 (+) True G189269
TU256417 other upstream 483191 33328103 ~ 33331713 (+) False pex7
TU256516 other downstream 31775 33859146 ~ 33860403 (+) False LOC120546766
TU256522 other downstream 104693 33932064 ~ 33939387 (+) True G189307
TU256520 other downstream 138212 33965583 ~ 33986476 (+) True G189305
TU256875 other downstream 635537 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 655493 34482864 ~ 34503755 (+) True G189541

Expression Profile