RNA id: TU256516


Basic Information

Item Value
RNA id TU256516
length 848
RNA type TUCP
GC content 0.60
exon number 2
gene id LOC120546766
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33859146 ~ 34000536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagatcCAGCAGTGGGACCAGAACCTGGAGAAACTGAACCTGGATCTGTTCCGTGTGCGCTGCTATCTGTCCAGCCTGCAGGGCGGCGAGCTGCCCAACCCCAAGAGCCTGCTCGCCGCCGCCAGCCGGCCCTCCAAGAGCATGCTGGGACGCCTGGGCGTcttctccgtgtcctccttcCATGCTCTGGTGTGCAGCAGAGACGAGGGAACGCTACGGCGACGCAGCCACTCTCTGTCGGGAGGAAGCAGCCGGAGGCGGGGCCTGCCGTCCTCTCTGAGGGCGCTGGACGCACCCAAGAGACGCAGCAGGGACGCCAGACACTCCACGGCCCAGGTAATACACCGCACCCACCACGGCCCAGGTAGTACACCACACCCACCACGGCCCAGGTAGTACACCGCACACACCATGGCCCAGGTAGTACACAGCACCCACCACGGCCCAGGTAGTACACCGCACCCACCACGGCCCAGGTAGTACACAGCACCCACCACGGCCCAGGTAGTACACAGCACCCACCACGGCCCAGGTAGTACACCGCACCCACCACGGCCCAGGTAGTACACAGCACCCACCACGGCCCAGGTAGTACACCGCACCCACCACGGCTCAGGTAGTACACAGCACCCACCACGGCCCAGGTAGTACACCGCACCCACCACGGCTCAGGTACTACACCGCACccaaagggtaggataggctatgatatataaagggtaggataggctacaatatataaagggtaggataggctacgatatataaagggtaggataggctacgatatataaagggtaggataggctacgatatataaagggtaggataggctactatttATAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256566 lncRNA upstream 3677 33853678 ~ 33855469 (+) False LOC120546446
TU256546 lncRNA upstream 27543 33760348 ~ 33831603 (+) False G189327
TU256545 lncRNA upstream 27543 33830952 ~ 33831603 (+) True G189327
TU256514 lncRNA upstream 31775 33814904 ~ 33827371 (+) True G189299
TU256547 lncRNA upstream 86037 33772638 ~ 33773109 (+) True G189328
TU256568 lncRNA downstream 2802 33863205 ~ 33876447 (+) True G189344
TU256503 lncRNA downstream 26012 33886415 ~ 33943562 (+) False G189294
TU256504 lncRNA downstream 26012 33886415 ~ 33944584 (+) True G189294
TU256517 lncRNA downstream 27109 33887512 ~ 33897573 (+) True G189302
TU256571 lncRNA downstream 30104 33890507 ~ 33891787 (+) False G189345
XM_039781373.1 mRNA upstream 2734 33846444 ~ 33856412 (+) True LOC120546446
XM_039781371.1 mRNA upstream 87744 33765353 ~ 33771402 (+) True LOC120546444
XM_039780949.1 mRNA upstream 192893 33629800 ~ 33666253 (+) True LOC120546181
XM_039780971.1 mRNA upstream 443060 33399801 ~ 33416086 (+) True LOC120546192
XM_039782540.1 mRNA upstream 472157 33328092 ~ 33386989 (+) False pex7
XM_039781947.1 mRNA downstream 147993 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA downstream 150537 34010940 ~ 34013448 (+) True LOC120546767
XM_039781374.1 mRNA downstream 158228 34018631 ~ 34035953 (+) True LOC120546447
XM_039782426.1 mRNA downstream 176653 34037056 ~ 34052641 (+) True LOC120547053
XM_039782425.1 mRNA downstream 178159 34038562 ~ 34052641 (+) False LOC120547053
TU256542 other upstream 87773 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 95520 33763465 ~ 33763626 (+) True LOC120547364
TU256525 other upstream 173590 33641620 ~ 33685556 (+) True G189309
TU256470 other upstream 400378 33453996 ~ 33458768 (+) True G189269
TU256417 other upstream 527433 33328103 ~ 33331713 (+) False pex7
TU256522 other downstream 71661 33932064 ~ 33939387 (+) True G189307
TU256520 other downstream 105180 33965583 ~ 33986476 (+) True G189305
TU256875 other downstream 602505 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 622461 34482864 ~ 34503755 (+) True G189541
TU256921 other downstream 626021 34486424 ~ 34487177 (+) True G189570

Expression Profile