RNA id: XM_039781371.1


Basic Information

Item Value
RNA id XM_039781371.1
length 614
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC120546444
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33765353 ~ 33771402 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttaattattgataACGTCTAATTGTAGTAAAATCCAACATATTTCAGGGAGAAAGTGTAATAACGTGTAGTTCACATTTCGGACTGTGGGGGGCAGCAGAGTGACGTAGAAGAGCGTTCGGTCCACCGGAAGTGACAGACGAATAAGTAAACTCCAAAACAAACCTTCTACATGTGGACATGTGGGCGGACTACagtttaaatatataataaactaCAAACTGAAGACGCTTTTTGAGAAGTGAAAATGGACGAAGAGCAAACGgctGGGTACAGGGAGCCCTGTGGTGTGTGTTCAGCGGTGGATTGGGGCGTTTCAGACGAGGGACGTTTCTACTGCAGGTCCTGCCACAACGTCATCgagAGAACCAGAGAGGTGGTGGACCCCACCTTCACTCCCGGCTCCTCCCGGATCTCCACCATCGGCCGAGGAACCAGAAACAAGAGGCCCGAGCGCGGGCGCCAGTGGGTGATCTGCGAAGGCTTCCAGTTCATCCTGAGAAACCAGGCCAACGCTCTGCTCAAACTGGGAGTCAGTCCACGATTTAAGGATGAAGTGCTGAGTCAGCTTTGGAGAATCTACCAAGAACATTTATTGTcttcaaaactgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256527 lncRNA upstream 3137 33743508 ~ 33762216 (+) True G189311
TU256543 lncRNA upstream 8283 33756783 ~ 33757070 (+) True G189325
TU256523 lncRNA upstream 12676 33752048 ~ 33752677 (+) True G189308
TU256536 lncRNA upstream 13729 33748019 ~ 33751624 (+) True G189318
TU256524 lncRNA upstream 79797 33685197 ~ 33685556 (+) False G189309
TU256547 lncRNA downstream 1236 33772638 ~ 33773109 (+) True G189328
TU256514 lncRNA downstream 43502 33814904 ~ 33827371 (+) True G189299
TU256545 lncRNA downstream 59550 33830952 ~ 33831603 (+) True G189327
TU256563 lncRNA downstream 68319 33839721 ~ 33884998 (+) True G189339
TU256566 lncRNA downstream 82276 33853678 ~ 33855469 (+) False LOC120546446
XM_039780949.1 mRNA upstream 99100 33629800 ~ 33666253 (+) True LOC120546181
XM_039780971.1 mRNA upstream 349267 33399801 ~ 33416086 (+) True LOC120546192
XM_039782540.1 mRNA upstream 378364 33328092 ~ 33386989 (+) False pex7
XM_039782541.1 mRNA upstream 378364 33328092 ~ 33386989 (+) False pex7
XM_039782542.1 mRNA upstream 378364 33328092 ~ 33386989 (+) False pex7
XM_039781373.1 mRNA downstream 75042 33846444 ~ 33856412 (+) True LOC120546446
XM_039781945.1 mRNA downstream 87750 33859152 ~ 34000536 (+) True LOC120546766
XM_039781947.1 mRNA downstream 236994 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA downstream 239538 34010940 ~ 34013448 (+) True LOC120546767
XM_039781374.1 mRNA downstream 247229 34018631 ~ 34035953 (+) True LOC120546447
XR_005637066.1 other upstream 1727 33763465 ~ 33763626 (+) True LOC120547364
TU256525 other upstream 79797 33641620 ~ 33685556 (+) True G189309
TU256470 other upstream 306585 33453996 ~ 33458768 (+) True G189269
TU256417 other upstream 433640 33328103 ~ 33331713 (+) False pex7
TU256147 other upstream 1143089 32576478 ~ 32622264 (+) False myo6a
TU256516 other downstream 87744 33859146 ~ 33860403 (+) False LOC120546766
TU256522 other downstream 160662 33932064 ~ 33939387 (+) True G189307
TU256520 other downstream 194181 33965583 ~ 33986476 (+) True G189305
TU256875 other downstream 691506 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 711462 34482864 ~ 34503755 (+) True G189541

Expression Profile