RNA id: TU256547


Basic Information

Item Value
RNA id TU256547
length 346
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G189328
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33772638 ~ 33773109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgtgtgtctgttgtgtgtctgttgtgtgtcagtGAAACTAGTTCTCAgtgttgtgtctctctctggtgtctctgtgtgtctgttgtgtgtctgttgtgtgtcagtGAAACTAGTTCTcagtgttgtgtctctgtgtgtctgttgtgtgtctgttgtgtgtctgttgtgtgtcagtGAAACTAGTTCTcagtgttgtgtctctgtgtgtacgaCCGAGACAGATTCTTACGTTTCCGTTTCATCACCACACATTTCTTCTTGCTGTTGGGGTGGAGAGGTTTCTTGGCGCTCCACTGTTTCCtgatgaccacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256527 lncRNA upstream 10422 33743508 ~ 33762216 (+) True G189311
TU256543 lncRNA upstream 15568 33756783 ~ 33757070 (+) True G189325
TU256523 lncRNA upstream 19961 33752048 ~ 33752677 (+) True G189308
TU256536 lncRNA upstream 21014 33748019 ~ 33751624 (+) True G189318
TU256524 lncRNA upstream 87082 33685197 ~ 33685556 (+) False G189309
TU256514 lncRNA downstream 41795 33814904 ~ 33827371 (+) True G189299
TU256545 lncRNA downstream 57843 33830952 ~ 33831603 (+) True G189327
TU256563 lncRNA downstream 66612 33839721 ~ 33884998 (+) True G189339
TU256566 lncRNA downstream 80569 33853678 ~ 33855469 (+) False LOC120546446
TU256568 lncRNA downstream 90096 33863205 ~ 33876447 (+) True G189344
XM_039781371.1 mRNA upstream 1236 33765353 ~ 33771402 (+) True LOC120546444
XM_039780949.1 mRNA upstream 106385 33629800 ~ 33666253 (+) True LOC120546181
XM_039780971.1 mRNA upstream 356552 33399801 ~ 33416086 (+) True LOC120546192
XM_039782540.1 mRNA upstream 385649 33328092 ~ 33386989 (+) False pex7
XM_039781373.1 mRNA downstream 73335 33846444 ~ 33856412 (+) True LOC120546446
XM_039781945.1 mRNA downstream 86043 33859152 ~ 34000536 (+) True LOC120546766
XM_039781947.1 mRNA downstream 235287 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA downstream 237831 34010940 ~ 34013448 (+) True LOC120546767
XM_039781374.1 mRNA downstream 245522 34018631 ~ 34035953 (+) True LOC120546447
TU256542 other upstream 1265 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 9012 33763465 ~ 33763626 (+) True LOC120547364
TU256525 other upstream 87082 33641620 ~ 33685556 (+) True G189309
TU256470 other upstream 313870 33453996 ~ 33458768 (+) True G189269
TU256417 other upstream 440925 33328103 ~ 33331713 (+) False pex7
TU256516 other downstream 86037 33859146 ~ 33860403 (+) False LOC120546766
TU256522 other downstream 158955 33932064 ~ 33939387 (+) True G189307
TU256520 other downstream 192474 33965583 ~ 33986476 (+) True G189305
TU256875 other downstream 689799 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 709755 34482864 ~ 34503755 (+) True G189541

Expression Profile