RNA id: XM_039781373.1


Basic Information

Item Value
RNA id XM_039781373.1
length 1891
RNA type mRNA
GC content 0.64
exon number 5
gene id LOC120546446
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 33846444 ~ 33856412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagaagaggaggaggagagagagagagagagagagagagagacagagggagggagaggaggctgCAGGACGGATATGAAGGAGCTGCTGAGTTTCTGTTTCTGAAGACTTAAAAACCGGTTTTGCGATGGGGAACACCGACAGCCACGCCAGCTTCGTGTCTCCCGCCAAATCGCCACCGTGTTCGCTCCGGCTCTCCTCCTGCAGGAGGGAGGAGgcgccatcatcatcatcatcggcTCGCAGCTGGTGGAGGACCAATCAGAGCCGTAGCCGCGGGAGGAACTACCTGAAACCGCAGCAGGCCGCCGGGCTGCCGTACGCGTCCTGGCGTTATGAACACGCCCCCACGCCGGGCGCCGCGCCTACTCCCAGGTTCTTCACCGGAAGTACCGGGCACAGCGTGGAGTGCACGTCTCTGCAGAGCAACGCCAGTTGCCGTGGCGGCGCTGGCGGCAGCCCCAAAGTGCTGCTCGGCAAAGACGGGAGCATGAGGGTGGAGTTCACCAACGCCAGGGGAGTCTCGGTGGAGACGCAGGGGCTCGCCGGCGCCACGACAGCAGCCGAACCTTCGCTGCGCACCAGTAAAGGCAGCTCGCTGAGCTCGGACGGGTCCTGGTACGACTCGCCGTGGGGGGCGGCCGGCGAGCTGGCCGACAACGTGTTCGTCTGCGCGCCGAGCAGCGCGCACGCTGCCTACTACTCGGCACGCACAGACGAGATGTCCAACGGTAACGCTGTCTTCTCGGCGCAAGTGGACGACTCGGTTGTGTTTAACGCCAGCGTCTTGTTCCCCTCTGCTTCCGGCGAGAACGGCGAGTTCTCCGGCGCCTACAACACTTGTTCCTCTGGGCGCACCGAGGACAGCGGCATCGGGGACTCGGTGATCCTGCCGGCCGACCTGCGAGACTTCAGCTCTACGTCGCTGGACAGCGTTTACCAAAACaccgagcagcagcagcagcagcccgcTGCCTTCCCTACCGCGTCGGACGCCGCTGCCTTCTGCTGCTCGGCGCCGCGGCTGGACGACATCATCGCAGAAGAGGAGGGGGGGTCAGGCGTGGAGCAGCGGTACTGCTCGCTGACGCTCCCCTGTCGCAGGACCGAGCCCGTTGGAGCTACCGCCGGGAACAGCCGCAAAGACTTCCTGAAGAGCCGGATCCGACAACTCAGCGACTGGACGGGCAGCCTGagcaggaagaagaggaggatccAGGAGCCGTACGGCAGCGACAGCAGCAATGGCTGCGACCTGCTGTGGTCCTCCAACCCTCTCCACgctcagaaccagaaccagggcCAGAACCAGGTCCCAGCAGCCCCCTGGGGCTCCTTCAGGAGCCTCAACCACAACCAGAACCAGGTCCCTGCAGCCCCCTGGGGCTCCTTCAGAAGCCTCaatcagaaccagaaccagagccGGAGCAGCGATGCCCAGCGGCAGAACGTCTACGAGAACTTCATGCAGGAGCTGGAGACGGGCCGGACCGAGCCTTCGGACGGggaagagggggaggaagagatggaggaggaggaggaggaggggggagacgGGCGTCTGGACTTCCTGTTTGAGACGGATCACGGCGCTGTGCGGCGGGCTGGATGGCTCTCTTTTAAACCTCTCATCACTGTCAACAAAGACAGGAAGCTGGAGCTGGTCGCTCGCCGCAAGTGGAAACACTACTGGGTCACCCTGAAAGgctgctctctgctgttttaTGAGACCTACGGGAAGACGCCTGGCGCCGAGCGGGAGCTTTCGCCGCGCTACGCCCTGCTGGCGGACGACAGCATCGTGCAGGCCGTCCCCGAACATCCCAAAAAGGAGCACGTCCTCTGTCTTAGCAACGCGCACGGAGACGTCTACCTGTTCCAGTGTGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256546 lncRNA upstream 14841 33760348 ~ 33831603 (+) False G189327
TU256545 lncRNA upstream 14841 33830952 ~ 33831603 (+) True G189327
TU256514 lncRNA upstream 19073 33814904 ~ 33827371 (+) True G189299
TU256547 lncRNA upstream 73335 33772638 ~ 33773109 (+) True G189328
TU256527 lncRNA upstream 84228 33743508 ~ 33762216 (+) True G189311
TU256568 lncRNA downstream 6793 33863205 ~ 33876447 (+) True G189344
TU256503 lncRNA downstream 30003 33886415 ~ 33943562 (+) False G189294
TU256504 lncRNA downstream 30003 33886415 ~ 33944584 (+) True G189294
TU256517 lncRNA downstream 31100 33887512 ~ 33897573 (+) True G189302
TU256571 lncRNA downstream 34095 33890507 ~ 33891787 (+) False G189345
XM_039781371.1 mRNA upstream 75042 33765353 ~ 33771402 (+) True LOC120546444
XM_039780949.1 mRNA upstream 180191 33629800 ~ 33666253 (+) True LOC120546181
XM_039780971.1 mRNA upstream 430358 33399801 ~ 33416086 (+) True LOC120546192
XM_039782540.1 mRNA upstream 459455 33328092 ~ 33386989 (+) False pex7
XM_039781945.1 mRNA downstream 2740 33859152 ~ 34000536 (+) True LOC120546766
XM_039781947.1 mRNA downstream 151984 34008396 ~ 34013448 (+) False LOC120546767
XM_039781946.1 mRNA downstream 154528 34010940 ~ 34013448 (+) True LOC120546767
XM_039781374.1 mRNA downstream 162219 34018631 ~ 34035953 (+) True LOC120546447
XM_039782426.1 mRNA downstream 180644 34037056 ~ 34052641 (+) True LOC120547053
TU256542 other upstream 75071 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 82818 33763465 ~ 33763626 (+) True LOC120547364
TU256525 other upstream 160888 33641620 ~ 33685556 (+) True G189309
TU256470 other upstream 387676 33453996 ~ 33458768 (+) True G189269
TU256417 other upstream 514731 33328103 ~ 33331713 (+) False pex7
TU256516 other downstream 2734 33859146 ~ 33860403 (+) False LOC120546766
TU256522 other downstream 75652 33932064 ~ 33939387 (+) True G189307
TU256520 other downstream 109171 33965583 ~ 33986476 (+) True G189305
TU256875 other downstream 606496 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 626452 34482864 ~ 34503755 (+) True G189541

Expression Profile