RNA id: TU256872


Basic Information

Item Value
RNA id TU256872
length 823
RNA type TUCP
GC content 0.61
exon number 7
gene id G189541
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34482864 ~ 34503755 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gAGTCGTCCGGCTGCTCCCGGCCTCCACCTCGGACCAGAGAAGTTCAGATCAACGGTCAGACGGTCAAACTGAAATACTGCTTCACCTGCAAGATCTTCAGGCCGCCGCGGGCGTCCCACTGCAGCCTCTGTGACAACTGTGTCGAGCGCTTCGACCACCACTGCCCCTGGGTGGGGAACTGCGTCGGCCGGAGGAACTACCGCTTCTTCTACCTCTTCATCGTCTCGCTGTCCTTCCTCACCGTCTTCATCTTCGCCTTCGTCATCACACACCTCATCATCAGATCCAACCGGATGGGTTTCCTGAGCGCGGTCAAAGACAGTCCGGCCAGCGTCCTGGAGCTGGCGGTGTGTTTCTTCTCCGTCTGGTCCATCGTGGGTCTGTCGGGGTTCCACACATACCTCATCAGCTCCAACCAGACCACCAACGAGGACATTAAAGGCTCCTGGTCCACCAAGCGAGGGAAGGAGAACTACAACCCGTACAGTTATGGAAACATCCAGACCAACTGCTGCGCTGCTCTGTGTGGACCTCTGCCTCCCAGTTTGATTGACAGGAGAGGTCTGATCCAATCGGACGCACTGCAGACCGTCTCCCAGGGCAACGGGACCGTCTCCCAGGGCAACGGAACGGCCAGCCACGCCTCCACCCGGCTCCACAGCCGCACGTGTGATCAGGACCAGTGCATCCAGAGCACCAAGTCTGtcctccaggctgcagccaacAACCCTGTGGTCCTGTCTCCTCTGCCGGGGAAGCCCTTGTCCCTGGGGGGCCCCTGCGCCCACCTGGCCCCCCCCCAGCCCTCCCTGCCGTCCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256861 lncRNA upstream 25194 34409656 ~ 34457670 (+) True G189537
TU256910 lncRNA upstream 25572 34456627 ~ 34457292 (+) True G189560
TU256908 lncRNA upstream 27520 34453468 ~ 34455344 (+) False LOC120546451
TU256913 lncRNA upstream 34178 34447865 ~ 34448686 (+) False LOC120546451
TU256853 lncRNA upstream 44180 34394786 ~ 34438684 (+) False G189535
TU256879 lncRNA downstream 38912 34542667 ~ 34562894 (+) True G189548
TU256927 lncRNA downstream 40730 34544485 ~ 34546167 (+) True G189575
TU256928 lncRNA downstream 53043 34556798 ~ 34557154 (+) True G189576
TU256933 lncRNA downstream 73562 34577317 ~ 34582503 (+) True G189579
TU256934 lncRNA downstream 82268 34586023 ~ 34676086 (+) True G189580
XM_039781380.1 mRNA upstream 29069 34378500 ~ 34453795 (+) True LOC120546451
XM_039781728.1 mRNA upstream 109362 34360125 ~ 34373502 (+) False LOC120546638
XM_039781778.1 mRNA downstream 11067 34514822 ~ 34527646 (+) True LOC120546659
XM_039781382.1 mRNA downstream 27633 34531388 ~ 34540087 (+) True LOC120546454
XM_039781801.1 mRNA downstream 56177 34559932 ~ 34571848 (+) True LOC120546680
XM_039781383.1 mRNA downstream 80292 34584047 ~ 34595606 (+) True LOC120546456
XM_039781793.1 mRNA downstream 118301 34622056 ~ 34624173 (+) True LOC120546672
TU256875 other upstream 17967 34462908 ~ 34464897 (+) True G189544
TU256520 other upstream 496388 33965583 ~ 33986476 (+) True G189305
TU256522 other upstream 543477 33932064 ~ 33939387 (+) True G189307
TU256516 other upstream 622461 33859146 ~ 33860403 (+) False LOC120546766
TU256542 other upstream 711491 33765501 ~ 33771373 (+) False LOC120546444
XR_005637062.1 other downstream 15533 34519288 ~ 34519426 (+) True LOC120547360
XR_005637063.1 other downstream 21133 34524888 ~ 34525026 (+) True LOC120547361
TU256925 other downstream 27762 34531517 ~ 34538625 (+) False LOC120546454
TU256926 other downstream 27762 34531517 ~ 34585439 (+) False LOC120546454
TU256876 other downstream 45614 34549369 ~ 34552365 (+) True G189545

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020026 True 3351 mRNA 0.43 9 NC_007127.7 33992506 ~ 34006332 (+)
bowfin (Amia calva) AMCG00010843 False 3538 mRNA 0.58 9 CM030133.1 2481874 ~ 2496446 (-)