RNA id: TU256880


Basic Information

Item Value
RNA id TU256880
length 453
lncRNA type intronic
GC content 0.50
exon number 2
gene id G189549
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34590922 ~ 34591590 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaatgaatgggagtcaatgggatgctaacgggaggtgatggctaggtagcatcagaatgaatgggagtcaatgggatgctaacgggaggtgatggctaggtagcatcagaatgaatgggagtcaatgggatgctaacgggaggtgatggctaggtagcatcagaatgaatgggagtcaatgggatgctaacgggaggtgatggctaggtagcatcagaatgaatgggagtcaatgggatgctaacgggaggtgatggcttggtagcgtcagaatgaatgggagtcaatgggatgctaacgggaggtgatggctaggtagcatcaaaatgaatgggagtcaatgggatgctaacaggaggtgatggcttgatagcatcagaatgaatgggagtcaatgggatgctaacgggaggtgatggcttggtagcgtcagaatggcgccataggaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256933 lncRNA upstream 8419 34577317 ~ 34582503 (+) True G189579
TU256879 lncRNA upstream 28028 34542667 ~ 34562894 (+) True G189548
TU256928 lncRNA upstream 33768 34556798 ~ 34557154 (+) True G189576
TU256927 lncRNA upstream 44755 34544485 ~ 34546167 (+) True G189575
TU256923 lncRNA upstream 96435 34493696 ~ 34494487 (+) True G189572
TU256894 lncRNA downstream 847 34592437 ~ 34606143 (+) False G189555
TU256892 lncRNA downstream 4070 34595660 ~ 34607338 (+) False G189555
TU256897 lncRNA downstream 4070 34595660 ~ 34607338 (+) False G189555
TU256900 lncRNA downstream 4070 34595660 ~ 34607338 (+) False G189555
XR_005636921.1 lncRNA downstream 4595 34596185 ~ 34607342 (+) True LOC120546694
XM_039781801.1 mRNA upstream 19074 34559932 ~ 34571848 (+) True LOC120546680
XM_039781382.1 mRNA upstream 50835 34531388 ~ 34540087 (+) True LOC120546454
XM_039781778.1 mRNA upstream 63276 34514822 ~ 34527646 (+) True LOC120546659
XM_039781380.1 mRNA upstream 137127 34378500 ~ 34453795 (+) True LOC120546451
XM_039781729.1 mRNA upstream 222148 34360127 ~ 34368774 (+) False LOC120546638
XM_039781793.1 mRNA downstream 30466 34622056 ~ 34624173 (+) True LOC120546672
XM_039781765.1 mRNA downstream 35888 34627478 ~ 34630935 (+) True LOC120546652
XM_039781767.1 mRNA downstream 188748 34780338 ~ 34795615 (+) False LOC120546653
XM_039781766.1 mRNA downstream 188751 34780341 ~ 34796403 (+) True LOC120546653
XM_039781384.1 mRNA downstream 212013 34803603 ~ 34827491 (+) True LOC120546458
TU256926 other upstream 5483 34531517 ~ 34585439 (+) False LOC120546454
XR_005637065.1 other upstream 20828 34569956 ~ 34570094 (+) True LOC120547363
XR_005637064.1 other upstream 25315 34565469 ~ 34565607 (+) True LOC120547362
TU256876 other upstream 38557 34549369 ~ 34552365 (+) True G189545
TU256925 other upstream 52297 34531517 ~ 34538625 (+) False LOC120546454
TU256888 other downstream 847 34592437 ~ 34607338 (+) True G189555
TU256898 other downstream 847 34592437 ~ 34607338 (+) False G189555
TU256938 other downstream 71425 34663015 ~ 34699244 (+) True G189582
TU257129 other downstream 232452 34824042 ~ 34825170 (+) False LOC120546458
TU257179 other downstream 417910 35009500 ~ 35010825 (+) True G189738

Expression Profile