RNA id: XM_039781765.1


Basic Information

Item Value
RNA id XM_039781765.1
length 1939
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC120546652
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34627478 ~ 34630935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGacgaagacagaaaacaggaacaACACGTCCATGTTAAACTCAAACTGACAAACTGTAACGCTGAAGCTCCACCCGTCATGACTCGGCAGAGACAaaccaggaaacaggaagttaTTCTGCCTCACTGAGACGACacacacgctctctctctctgacagacGGACGATAAGATTCACCTAAAGACTAAACCACCACTTTCTCTGAGAGAGGACAGCTATAGGAGGGAGTACTGGGAGTACTGGGAGTACTGGGAGTCCTACCACTTCAACCAGCTGCTGAATCCACAGACTGAACGAGAGATTTTATAGAAACAAAGACTCAAAGTGAACAGAAAATGGCTTCCAGATTAGAGGAAGATCTCTGCTGTCCTGTCTGCCATGAAGTCTTTAAAGATCCTGTCGTTCTGTCGTGCagccacagcttctgtaaagACTGTCTGCAGAGCTGGTGGACAGAGAAATCAGTCAAGGAGTGTCCAGTTTGTAAAATATCTTCAAAGTCAGAACCAGCTTGTAGCCTGGTGTTGAAGAACCTGTGTGAGGCCTTTTTACaggagagagatcagagagtTTCAGAgtctctctgcagtctgcactctgagaaactcaaactcttctgtctggaccatcagcagccGGTGTGTGTCATCTGTCTGCATTCAGaagaacacaccaaacacagaTTCAAACCGGTCAATGAAGCTGCACGACAACACAGGAAGGAACTTCAGGAAACTCTGGAGTCATTAAAGGAGAAGATAGAGGTTTTTGAACAAGTTAAAGAGAAGTGTGATCAAACAGCAAAACACATAAAGGTCCAGGCTCGACGCACAGAGACGCAGATTAAGGATCAGTTTAAGAAACTTCACCAGTttctagaagaggaagaggaggccaggatggctgcactgagggaggaagaggagcagaagagtcagaggatggaggagaagatggatgatctgagcagagagatagcagctctttcagacacagtccGAGCCACAGTGGAGCAGGTGAGAGCTGAAGAcgtctcattcctgatcaactacaaggctgcagtggaaagagtccagcagagccccctgctggatgatccacagctgctctcaggagctctgatagacgaggccaaacacctgggcaacctgagcttcaacatctggaacaagatgaagggcatggtctcctacactcctgttattctggacccaaacactgctgatgcatatctcatcctgtctgaagatctgaccagtgtgagaccaggagagagacagcagcTTCCTGATAATCCAGAGAGGATGGATGACCCTTACTACTCTgtcctgggctctgagggctttaactcagggactcacagctgggatgTCGAGATTGGAGACAGTGAAGACTGGTCACTGGGTGTGATAGCAGAGTCTGTCCAGAGGAAGGGAGACTTACAGTCTGGATTATGGAGACTGTGTTTCTATGATGATGAATACTCAGCCAAGTCACCATCAGATCCAGACACTGATCTCCCGTTTAAGCAGCTCCAGAGGATcagagtgactctggactggaaCAGAAGAAAGCTGTCGTTCTCTGATCctgatactaacacacacatacacaccttcacacacactttcactgagagGATGTTTCCATACTTTGACACTTGTGAACTCATGATTTCACCAGTGAAGGTCTGTGTGACTGTAGAACAGAAATAGATAATGATAAGCATCTATCAGTGTATTTCAAGACGTGATGAAGTCTTTAAGGAACACATAATTATGTTGTTCTGATGATGACGTTGATCTAAGAGGGTGAACTAGTGAAGGTGTGATCCCGGACGAGCCCCCAATATGTTATGACCGGCTACAACAAAGAAGGGAGGTGCACTGCAAACatctgacatttttatgacatgtaTTAAAGTAATCAAAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256945 lncRNA upstream 723 34624768 ~ 34626755 (+) True G189584
TU256944 lncRNA upstream 10026 34613621 ~ 34617452 (+) True G189583
XR_005636921.1 lncRNA upstream 20136 34596185 ~ 34607342 (+) True LOC120546694
TU256892 lncRNA upstream 20140 34595660 ~ 34607338 (+) False G189555
TU256897 lncRNA upstream 20140 34595660 ~ 34607338 (+) False G189555
TU256952 lncRNA downstream 22293 34653228 ~ 34662076 (+) True G189589
TU256935 lncRNA downstream 50049 34680984 ~ 34681707 (+) True G189581
TU256943 lncRNA downstream 53078 34684013 ~ 34699122 (+) False G189582
TU256965 lncRNA downstream 56589 34687524 ~ 34687887 (+) True G189597
TU256941 lncRNA downstream 67714 34698649 ~ 34699491 (+) False G189582
XM_039781793.1 mRNA upstream 3305 34622056 ~ 34624173 (+) True LOC120546672
XM_039781383.1 mRNA upstream 31872 34584047 ~ 34595606 (+) True LOC120546456
XM_039781801.1 mRNA upstream 55630 34559932 ~ 34571848 (+) True LOC120546680
XM_039781382.1 mRNA upstream 87391 34531388 ~ 34540087 (+) True LOC120546454
XM_039781778.1 mRNA upstream 99832 34514822 ~ 34527646 (+) True LOC120546659
XM_039781767.1 mRNA downstream 149403 34780338 ~ 34795615 (+) False LOC120546653
XM_039781766.1 mRNA downstream 149406 34780341 ~ 34796403 (+) True LOC120546653
XM_039781384.1 mRNA downstream 172668 34803603 ~ 34827491 (+) True LOC120546458
XM_039781771.1 mRNA downstream 206263 34837198 ~ 34845092 (+) True LOC120546655
XM_039781755.1 mRNA downstream 225901 34856836 ~ 34895534 (+) True LOC120546649
TU256929 other upstream 16995 34564785 ~ 34610483 (+) True G189577
TU256888 other upstream 20140 34592437 ~ 34607338 (+) True G189555
TU256898 other upstream 20140 34592437 ~ 34607338 (+) False G189555
TU256926 other upstream 42039 34531517 ~ 34585439 (+) False LOC120546454
XR_005637065.1 other upstream 57384 34569956 ~ 34570094 (+) True LOC120547363
TU256938 other downstream 32080 34663015 ~ 34699244 (+) True G189582
TU257129 other downstream 193107 34824042 ~ 34825170 (+) False LOC120546458
TU257179 other downstream 378565 35009500 ~ 35010825 (+) True G189738
TU257158 other downstream 383460 35014395 ~ 35017163 (+) True G189721
TU257203 other downstream 514575 35145510 ~ 35147428 (+) True LOC120546683

Expression Profile