RNA id: TU256908


Basic Information

Item Value
RNA id TU256908
length 1737
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC120546451
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34378500 ~ 34455344 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACTATTTAATActtgtatttttaattttttttaattcttttgttGTCCGTTTTGTTGTTTAGTTTTTAACCAAAGTGTGACGGTCAGAGTCTCGGCTTCTGGCTCTCTTCGTTTCTTTCTGTTCTTCGGAGTTATTTAAACGGTGACACGTGTTGTAGATAGAagtctttattttacattattgaTGTTCAGTCACAGACTTTGATAGGGGATGCACccaatccagatttttggggttttcggctgaatcctgaaccccctggttgagattgtgctgactcctcctcccatcctcagtccatgaacccagtaaacacatgaatgaagtaaacagggactgtccttcctttgccgtacctgaagttgctgcattctgtctgctgtctggagattccttcgtgcacaactcgtcttctttcagatgttttgtACCAaatgtaacagcggccatgttgtgtatagtttagggtccttgccaccaccagaccaatcagcattgaacagattgaacatgtagctggacttgaatggtcttcttttgactgaaagtactgccaaacaacaacattttctgctcaccagatccatgtccacttcctcataGCCTACTgttcaccagatccatgtccactttctcacagcctactgctcaccagatccatgtccacttcctcacagcctactgctcaccagatccatgtccacatgtccacttcctcacagcctactgctcaccagatccatgtccactttctcacagcctactgttcaccagatccatgtccacttcctcacagcctactgttcaccagttccatgtccacttcctcacagcctgctgcattgaacgctccacctacgtaaacaccttcccgtaatcaacggcgccgtcactacggcgaccagcgtagcgcgccgagtgcaagcgtagggttcggttcgctgggaaaaaattctaaggttcagcagaaacccaacccttttttggggggggggggcttttccaccttttaatttttgacaggacagcgaggtgagagagggtgagagggggaagacatgcaggaaattgtcacaggattcgaaccctggacctctgtgtcgaggcataaacctcccagtatatgtgcgccagctctaccactgaaccaacctggccactcaaaaaaaaataaaataaataaaagcccaatattcagcagATTCTGAAGtccaatcctggattcggtgcatccctggtaCTTTGTTTTCGGTGCAATATTTTCGTTTTAATGTGAATTATTTGACCATCTGCAGTGCGTCCATCAGTATTTTGCCGCCAGCAGTATCGCACGCCACTGTCTGTTTTTATAAGAACTTTTTATGTCCTCTACAAACCTCCCATCATGCATCTGTAAATAGACAATATGTACGTTATGTATGTGAGCCCAATGACGCGGTGAGGTACGTAGCTGAACGTTTAGTTCCTCTCTTCCCAGCAGGCGAAGACTTTGTTCTCCGTGTTAAAGGGGAACAGCCCTCTCGGTTTCAGGAGGTGTTTTGGCGGGAAGGTGTGTTTTGATTTGAGAGACTGTGTGTACAGGTATCTGTACTCCTTTAACTGACACCACTTCAGAAACAGCTgtaacaaaatgtaaagagatggaaaagaaaatctcttCATCCTGAGAGTCTCCTGTTTAATTTCACAGATGTTTAATAAACGTACCTGAACTCTGGTTGAGCACTGAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256913 lncRNA upstream 4782 34447865 ~ 34448686 (+) False LOC120546451
TU256850 lncRNA upstream 14784 34394786 ~ 34438684 (+) False G189535
TU256910 lncRNA downstream 1283 34456627 ~ 34457292 (+) True G189560
TU256881 lncRNA downstream 6325 34461669 ~ 34517856 (+) True G189550
TU256919 lncRNA downstream 28532 34483876 ~ 34562252 (+) True G189568
TU256923 lncRNA downstream 38352 34493696 ~ 34494487 (+) True G189572
TU256879 lncRNA downstream 87323 34542667 ~ 34562894 (+) True G189548
XM_039781723.1 mRNA upstream 79966 34360125 ~ 34373502 (+) False LOC120546638
XM_039781778.1 mRNA downstream 59478 34514822 ~ 34527646 (+) True LOC120546659
XM_039781382.1 mRNA downstream 76044 34531388 ~ 34540087 (+) True LOC120546454
XM_039781801.1 mRNA downstream 104588 34559932 ~ 34571848 (+) True LOC120546680
XM_039781383.1 mRNA downstream 128703 34584047 ~ 34595606 (+) True LOC120546456
XM_039781793.1 mRNA downstream 166712 34622056 ~ 34624173 (+) True LOC120546672
TU256520 other upstream 466992 33965583 ~ 33986476 (+) True G189305
TU256522 other upstream 514081 33932064 ~ 33939387 (+) True G189307
TU256516 other upstream 593065 33859146 ~ 33860403 (+) False LOC120546766
TU256542 other upstream 682095 33765501 ~ 33771373 (+) False LOC120546444
XR_005637066.1 other upstream 689842 33763465 ~ 33763626 (+) True LOC120547364
TU256875 other downstream 7564 34462908 ~ 34464897 (+) True G189544
TU256872 other downstream 27520 34482864 ~ 34503755 (+) True G189541
TU256921 other downstream 31080 34486424 ~ 34487177 (+) True G189570
XR_005637062.1 other downstream 63944 34519288 ~ 34519426 (+) True LOC120547360
XR_005637063.1 other downstream 69544 34524888 ~ 34525026 (+) True LOC120547361

Expression Profile