RNA id: XM_039781382.1


Basic Information

Item Value
RNA id XM_039781382.1
length 802
RNA type mRNA
GC content 0.56
exon number 5
gene id LOC120546454
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34531388 ~ 34585439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCAAACTAGAAAAAGATAGAAATTAAGTACGTAGTTTATCTACATTTGTGTCGATTAAAAAGGGAACCTTTTTAACCGCTATTTCCGGTTTGTCTCGTCCTTGTATTAAATTCGCCGTGCTGGACGTTAAATAAGGAAGTAAACAAAAGTTAGGACTAGCTTCACGTTTCTGCTTTTCTGCTCCCAAAATGTCTGCAACAACGCCGAGACAGACGTTTTTAAACCCGGTGATCCCCTTCGCTGGGACGATCCTGGGCGGGCTGTTGCCGGGGGAGATGGTTCTCATCCAGGGCTCGGTGCCGTCTGATGCCGACAGGTTCCAGGTAGACTTCACGTGTGGCAGCAGCGTGAAGCCGCGAGCTGACGTGGCGTTCCACTTCAACCCGCGGTTCAGGAGGTCAGCGTGTGTCGTGTGCAACTCTCTGCAGAGCGAGCGCTGGGGCCGGGAGGAGGTCCTGCACGCCAAACCCTTCGCCGCCGGCGAGACGTTCGAACTCATCGTGCTCGTCCTCAAAGACGCGTttaagGTGGCGGTGAACGGAGCTCACGTTCTGGAGTACAAACACCGCGTGGATCTGGATCGGGTCGACACCCTGTCCATCTCTGGGAAGGTCCACGTGGGAGCTGTGGGCATCCTGGCCAACactgtgagacacacacacacacCGCATCCGCCACACCGGGTGAATCGCCTCGCTGCCTCCAACGCCAACGCCTTCACCCCGGCCGGCCGGCCGACAGAAGCCTCCCACCACCACGGCCAGGAGGAGATCGAACGCATGCCCCCCAGTGTCTCATGA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256881 lncRNA upstream 13532 34461669 ~ 34517856 (+) True G189550
TU256885 lncRNA upstream 27845 34419216 ~ 34503543 (+) False G189553
TU256886 lncRNA upstream 27845 34433979 ~ 34503543 (+) True G189553
TU256923 lncRNA upstream 36901 34493696 ~ 34494487 (+) True G189572
TU256910 lncRNA upstream 74096 34456627 ~ 34457292 (+) True G189560
TU256879 lncRNA downstream 2580 34542667 ~ 34562894 (+) True G189548
TU256927 lncRNA downstream 4398 34544485 ~ 34546167 (+) True G189575
TU256928 lncRNA downstream 16711 34556798 ~ 34557154 (+) True G189576
TU256933 lncRNA downstream 37230 34577317 ~ 34582503 (+) True G189579
TU256934 lncRNA downstream 45936 34586023 ~ 34676086 (+) True G189580
XM_039781778.1 mRNA upstream 3742 34514822 ~ 34527646 (+) True LOC120546659
XM_039781380.1 mRNA upstream 77593 34378500 ~ 34453795 (+) True LOC120546451
XM_039781728.1 mRNA upstream 157886 34360125 ~ 34373502 (+) False LOC120546638
XM_039781801.1 mRNA downstream 19845 34559932 ~ 34571848 (+) True LOC120546680
XM_039781383.1 mRNA downstream 43960 34584047 ~ 34595606 (+) True LOC120546456
XM_039781793.1 mRNA downstream 81969 34622056 ~ 34624173 (+) True LOC120546672
XM_039781765.1 mRNA downstream 87391 34627478 ~ 34630935 (+) True LOC120546652
XM_039781767.1 mRNA downstream 240251 34780338 ~ 34795615 (+) False LOC120546653
XR_005637063.1 other upstream 6362 34524888 ~ 34525026 (+) True LOC120547361
XR_005637062.1 other upstream 11962 34519288 ~ 34519426 (+) True LOC120547360
TU256872 other upstream 27633 34482864 ~ 34503755 (+) True G189541
TU256921 other upstream 44211 34486424 ~ 34487177 (+) True G189570
TU256875 other upstream 66491 34462908 ~ 34464897 (+) True G189544
TU256876 other downstream 9282 34549369 ~ 34552365 (+) True G189545
TU256929 other downstream 24698 34564785 ~ 34610483 (+) True G189577
XR_005637064.1 other downstream 25382 34565469 ~ 34565607 (+) True LOC120547362
XR_005637065.1 other downstream 29869 34569956 ~ 34570094 (+) True LOC120547363
TU256888 other downstream 52350 34592437 ~ 34607338 (+) True G189555

Expression Profile