RNA id: TU257129


Basic Information

Item Value
RNA id TU257129
length 584
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC120546458
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34803603 ~ 34827491 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAGAAAAATAATGACGAGACCTCAAGAGGTCGTCTTGGAAACTCTAGAAGATTTGGGAGATGAAGACTTTGAAAAATTCAAGTTGCTCCTGCAGCAGCGGGGGGTCCTAGAAGACTTCCCAGCAATCCCAAAGAGTAAACTGGAGAATGCAAACAGGGTGAAGACAGTGGATCAGATGTTCCAGACTTACTCTACAAACACTATTAATGTGACCAGAATAGTTTTAGTGAAGATCAATCAATTTGAGCTAGTGAAGAATTTATCAAAGACCATCTCAGAACCTGCTGagATTGCTGCTATGTGCCAGCGAAAAGTCAAATCCAACTCACAAaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaacaaaacccttctgaatcagatgttcacagagatctacatcacaaAGGAAGGGACTACAGGGGTCAATgctgaacatgaggtcagacagattgaaacagcatccaggaaaccagacagaccagaaacaacaatcagacatgaagacatctttaaaaccccacctggaagagatgaaccaatcagaacagtgctgacaaagggagtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256970 lncRNA upstream 87088 34708726 ~ 34736954 (+) True G189601
XR_005636914.1 lncRNA upstream 101345 34720047 ~ 34722697 (+) True LOC120546687
XR_005636915.1 lncRNA upstream 104857 34717037 ~ 34719185 (+) True LOC120546688
TU256955 lncRNA upstream 108609 34714902 ~ 34715433 (+) True G189590
TU256941 lncRNA upstream 124551 34698649 ~ 34699491 (+) False G189582
TU257137 lncRNA downstream 5506 34830676 ~ 34836404 (+) True G189711
TU257139 lncRNA downstream 5506 34830676 ~ 34831615 (+) False G189711
TU257138 lncRNA downstream 5954 34831124 ~ 34831615 (+) False G189711
TU257156 lncRNA downstream 110347 34935517 ~ 35084911 (+) False G189720
TU257175 lncRNA downstream 124934 34950104 ~ 34950650 (+) True G189735
XM_039781766.1 mRNA upstream 27639 34780341 ~ 34796403 (+) True LOC120546653
XM_039781767.1 mRNA upstream 28427 34780338 ~ 34795615 (+) False LOC120546653
XM_039781765.1 mRNA upstream 193107 34627478 ~ 34630935 (+) True LOC120546652
XM_039781793.1 mRNA upstream 199869 34622056 ~ 34624173 (+) True LOC120546672
XM_039781383.1 mRNA upstream 228436 34584047 ~ 34595606 (+) True LOC120546456
XM_039781771.1 mRNA downstream 12028 34837198 ~ 34845092 (+) True LOC120546655
XM_039781755.1 mRNA downstream 31666 34856836 ~ 34895534 (+) True LOC120546649
XM_039781758.1 mRNA downstream 31666 34856836 ~ 34891563 (+) False LOC120546649
XM_039781757.1 mRNA downstream 57125 34882295 ~ 34895534 (+) False LOC120546649
XM_039781756.1 mRNA downstream 61440 34886610 ~ 34895534 (+) False LOC120546649
TU256938 other upstream 124798 34663015 ~ 34699244 (+) True G189582
TU256929 other upstream 213559 34564785 ~ 34610483 (+) True G189577
TU256888 other upstream 216704 34592437 ~ 34607338 (+) True G189555
TU256898 other upstream 216704 34592437 ~ 34607338 (+) False G189555
TU256926 other upstream 238603 34531517 ~ 34585439 (+) False LOC120546454
TU257179 other downstream 184330 35009500 ~ 35010825 (+) True G189738
TU257158 other downstream 189225 35014395 ~ 35017163 (+) True G189721
TU257203 other downstream 320340 35145510 ~ 35147428 (+) True LOC120546683
TU257162 other downstream 333053 35158223 ~ 35166388 (+) True G189723
TU257244 other downstream 424571 35249741 ~ 35250635 (+) False G189769

Expression Profile