RNA id: TU257153


Basic Information

Item Value
RNA id TU257153
length 535
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G189720
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 34935517 ~ 35084911 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacatacacacagacgcacacacagacacacacattcacacagagacacaaacacattcacacacacacagacatacacacaacacacagacacacacacacacacagacacaaacacattcacacacagacatacacacaacacacacacacacacattcacacacacagacatacacacaacacacagacagacacacacacacagaaacactacTATTGGCTACGGTGAGATGTGGTCAGAGGGCGAGCGGCTCTGTGGACTTTGTAGTTTCCGTGTGTAGTTCCGTGGCTGTGCTTGCTGCTGCATGCTCTCAGCTGTTTGATGTTGTGTTGTGATTGGCCGCCTGCAGGCAGCCATGTTTGTAGTTCTTAACTCCAGTTTCTCTGATAAAAGAGAGAATCAGAAAAATGTGAAAGAGATGAAAAGTATTTAATAACATATTTAGGATTCCTGAACGTGACACTAAAATAAATCATGAGCTAATAGGatacctctctctctctctctctctccctctctctccctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257175 lncRNA upstream 8602 34950104 ~ 34950650 (+) True G189735
TU257176 lncRNA upstream 8931 34950104 ~ 34950321 (+) False G189735
TU257137 lncRNA upstream 122848 34830676 ~ 34836404 (+) True G189711
TU257139 lncRNA upstream 127637 34830676 ~ 34831615 (+) False G189711
TU257138 lncRNA upstream 127637 34831124 ~ 34831615 (+) False G189711
TU257157 lncRNA downstream 108 35014395 ~ 35076967 (+) False G189721
TU257169 lncRNA downstream 1679 35015966 ~ 35081327 (+) True G189729
TU257180 lncRNA downstream 3805 35018092 ~ 35022515 (+) True G189739
TU257170 lncRNA downstream 6577 35020864 ~ 35082370 (+) True G189730
TU257190 lncRNA downstream 53690 35067977 ~ 35069504 (+) True G189746
XM_039781773.1 mRNA upstream 17921 34928418 ~ 34941331 (+) False allc
XM_039781772.1 mRNA upstream 17921 34928419 ~ 34941331 (+) True allc
XM_039781715.1 mRNA upstream 32089 34905991 ~ 34927163 (+) True LOC120546635
XM_039781757.1 mRNA upstream 63718 34882295 ~ 34895534 (+) False LOC120546649
XM_039781791.1 mRNA downstream 173629 35187916 ~ 35193265 (+) True gje1
XM_039781788.1 mRNA downstream 189919 35204206 ~ 35345930 (+) True vta1
XM_039781789.1 mRNA downstream 189919 35204206 ~ 35345930 (+) False vta1
XM_039781774.1 mRNA downstream 375422 35389709 ~ 35403269 (+) True ccr6a
XM_039781389.1 mRNA downstream 512601 35526888 ~ 35532983 (+) True LOC120546462
TU257129 other upstream 134082 34824042 ~ 34825170 (+) False LOC120546458
TU256938 other upstream 260008 34663015 ~ 34699244 (+) True G189582
TU256888 other upstream 351914 34592437 ~ 34607338 (+) True G189555
TU256898 other upstream 351914 34592437 ~ 34607338 (+) False G189555
XR_005637065.1 other upstream 389158 34569956 ~ 34570094 (+) True LOC120547363
TU257158 other downstream 108 35014395 ~ 35017163 (+) True G189721
TU257203 other downstream 131223 35145510 ~ 35147428 (+) True LOC120546683
TU257162 other downstream 143936 35158223 ~ 35166388 (+) True G189723
TU257244 other downstream 235454 35249741 ~ 35250635 (+) False G189769
TU257254 other downstream 237493 35251780 ~ 35307435 (+) True G189770

Expression Profile