RNA id: TU257228


Basic Information

Item Value
RNA id TU257228
length 375
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G189767
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 35258578 ~ 35446421 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacactcacacacacacacacacacacacacacacacggacatggacacacacagacgtatgctcgcaagcgcacacacacacacacacacacatgcatatatacacacacacacacacacacacatggacacacagacgcacgcaaGAACACACGTGtggggtacacacacacacacacaggcagacagacacacacacacacggacacacatgcTCGCACGCACGCAAgaacccactcacacacacacacacacgtatgctcgcatgcacacacacacacagacacacacagacacacacatgctctcaTCAACCGGCTCATTACAGACTCATCAATATTGTCACAAACGGCACATTAAGGTTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257257 lncRNA upstream 13197 35244524 ~ 35245381 (+) True G189771
TU257171 lncRNA upstream 80210 35177625 ~ 35178368 (+) True G189731
TU257209 lncRNA upstream 82709 35174810 ~ 35175869 (+) True G189763
TU257167 lncRNA upstream 95063 35162057 ~ 35163515 (+) True G189727
XR_005636906.1 lncRNA upstream 111313 35145489 ~ 35147265 (+) False LOC120546683
TU257218 lncRNA downstream 150 35348345 ~ 35446421 (+) False G189767
TU257271 lncRNA downstream 84480 35432675 ~ 35509997 (+) False G189784
TU257281 lncRNA downstream 90766 35438961 ~ 35497639 (+) False G189785
TU257280 lncRNA downstream 111742 35459937 ~ 35558041 (+) True G189785
TU257285 lncRNA downstream 111742 35459937 ~ 35547399 (+) False G189785
XM_039781791.1 mRNA upstream 65313 35187916 ~ 35193265 (+) True gje1
XM_039781773.1 mRNA upstream 317247 34928418 ~ 34941331 (+) False allc
XM_039781772.1 mRNA upstream 317247 34928419 ~ 34941331 (+) True allc
XM_039781715.1 mRNA upstream 331415 34905991 ~ 34927163 (+) True LOC120546635
XM_039781756.1 mRNA upstream 363044 34886610 ~ 34895534 (+) False LOC120546649
XM_039781774.1 mRNA downstream 41514 35389709 ~ 35403269 (+) True ccr6a
XM_039781389.1 mRNA downstream 178693 35526888 ~ 35532983 (+) True LOC120546462
XM_039781750.1 mRNA downstream 495567 35843762 ~ 35856031 (+) True LOC120546647
XM_039781751.1 mRNA downstream 495567 35843762 ~ 35856031 (+) False LOC120546647
XM_039781390.1 mRNA downstream 512597 35860792 ~ 35877941 (+) True LOC120546463
TU257244 other upstream 7943 35249741 ~ 35250635 (+) False G189769
TU257162 other upstream 92190 35158223 ~ 35166388 (+) True G189723
TU257203 other upstream 111150 35145510 ~ 35147428 (+) True LOC120546683
TU257158 other upstream 241415 35014395 ~ 35017163 (+) True G189721
TU257179 other upstream 247753 35009500 ~ 35010825 (+) True G189738
TU257294 other downstream 178653 35526848 ~ 35530343 (+) False LOC120546462
TU257342 other downstream 564325 35912520 ~ 35916478 (+) False zbtb25
TU257395 other downstream 633623 35981818 ~ 36019599 (+) True G189858
TU257398 other downstream 633623 35981818 ~ 36019599 (+) False G189858
TU257460 other downstream 865686 36213881 ~ 36214599 (+) True G189895

Expression Profile