RNA id: XM_039781389.1


Basic Information

Item Value
RNA id XM_039781389.1
length 832
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120546462
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 35526848 ~ 35532983 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTAAGGGTGTGCCATTGTCCTCGgatcacacgcacacagagaccaGGATGGACGACGATGAAAAGAGCAGCTTTATCTCTGCCAGTGTTTCCTCGACAAATGAAGTTGGAAAGTCTCTAAATCAACCTGAACAACAAAAGATAGAGAAATCGGACCTCTTAAGAACTTTTGAAGATTTGGGAGCCAAAGACTTTAAACGCTTCCAGTGGCTCCTGCAGCAGCCAGAGGTCCTTAAAGACTTCCCAGCAATCCCAAAGAGTCGACTGGAGAATGCAGACCGGATGGACACAGTGGATCAGATGTTCCAGATCTATAGTATAAACACTTTTAAAGTGACCAAGATAGTTTTAGAAAAGATGAATCAGAATGATCTAGTTCTAGATCTAGAGAAGTTAACAAAGACCGTTACAGAACCTGCAGAGAGTATTGCTGCAAAGAAGATATACAAAAACCGTCTTCATCAGATCTATGTAGATCGGATCTACTACACCAGTTTTTCTAGGCCTGGAAGTTACCCATATGGACAGGACTGGACTGGAGACGGACAAGAGATGGCAGTTGGAAGTGACGGGTCAGGAAGTGAGAATAGTGTAGGCCAGTGGTCAAAAAGTGGGAAAAAACGAAAGAAAGCAATACAGCACAAAACTGATAgaatctgcaggtttgaagatTTCGAGGTTGtcttcatctttgacggtctggatgaCTGTCGACTTCCTCTTGATTTCCACCACACTGAGATCCTaactgatgttacagagtccacctcaGCCCACGACACCTCCAGAGGGTTCAGCAGTAAATCCCAGCGTCCCAGGTTCACTCCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257292 lncRNA upstream 15988 35510425 ~ 35510900 (+) True G189790
TU257271 lncRNA upstream 16891 35432675 ~ 35509997 (+) False G189784
TU257276 lncRNA upstream 16891 35468397 ~ 35509997 (+) False G189784
TU257272 lncRNA upstream 16891 35469871 ~ 35509997 (+) True G189784
TU257274 lncRNA upstream 16891 35492945 ~ 35509997 (+) False G189784
XR_005636917.1 lncRNA downstream 3722 35536705 ~ 35538563 (+) True LOC120546690
TU257284 lncRNA downstream 17011 35549994 ~ 35554754 (+) False G189785
TU257310 lncRNA downstream 66131 35599114 ~ 35787979 (+) True G189801
TU257319 lncRNA downstream 132211 35665194 ~ 35670696 (+) True G189809
TU257352 lncRNA downstream 164144 35697127 ~ 35877934 (+) False LOC120546463
XM_039781774.1 mRNA upstream 123619 35389709 ~ 35403269 (+) True ccr6a
XM_039781788.1 mRNA upstream 180958 35204206 ~ 35345930 (+) True vta1
XM_039781789.1 mRNA upstream 180958 35204206 ~ 35345930 (+) False vta1
XM_039781791.1 mRNA upstream 333623 35187916 ~ 35193265 (+) True gje1
XM_039781773.1 mRNA upstream 585557 34928418 ~ 34941331 (+) False allc
XM_039781750.1 mRNA downstream 310779 35843762 ~ 35856031 (+) True LOC120546647
XM_039781751.1 mRNA downstream 310779 35843762 ~ 35856031 (+) False LOC120546647
XM_039781390.1 mRNA downstream 327809 35860792 ~ 35877941 (+) True LOC120546463
XM_039781768.1 mRNA downstream 379513 35912496 ~ 35917525 (+) False zbtb25
XM_039781769.1 mRNA downstream 379553 35912536 ~ 35917525 (+) True zbtb25
TU257254 other upstream 219453 35251780 ~ 35307435 (+) True G189770
TU257245 other upstream 226910 35298961 ~ 35299978 (+) True G189769
TU257244 other upstream 276253 35249741 ~ 35250635 (+) False G189769
TU257162 other upstream 360500 35158223 ~ 35166388 (+) True G189723
TU257203 other upstream 379460 35145510 ~ 35147428 (+) True LOC120546683
TU257342 other downstream 379537 35912520 ~ 35916478 (+) False zbtb25
TU257395 other downstream 448835 35981818 ~ 36019599 (+) True G189858
TU257398 other downstream 448835 35981818 ~ 36019599 (+) False G189858
TU257460 other downstream 680898 36213881 ~ 36214599 (+) True G189895
TU257465 other downstream 841317 36374300 ~ 36375834 (+) True G189897

Expression Profile