RNA id: TU257335


Basic Information

Item Value
RNA id TU257335
length 2523
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G189821
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 35891042 ~ 35985685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTGGTTTATTAAGAGCTTTAAGAAAGTTTTGTGTTCAAACGGACCATTGTGAGAAAaaagagcaacaaaaaaacgGTCAGACGGCTGTGTTCAGATCTGCCCAAATAAACCAGAGTCCAACACACAAAGTAGTGTTTCTTGTTCTTGAACTTCTTCACGATGTGACTGACGTGTACGACAGGATCATATATCCATTTGAATATGTAACTGTGATTAAAGATGCTTCAGACAGGAGTTTTTCAAGGTTTTGGTCGCCTTTTCAagcgtcttgctgcccgactcACAGATTATATTGTGTCTATGAGAACTTTACAGAACAGACACGTGGTTATTAAAAGGAGAATACCGGTGGATTTCAACACATAGCTCTGTTGTGTGTAAATGTGGAgagctgtcagtagcgagaaaaagaaaaacaaatcggTGCtacctacaccgtgttatcctcctgctagtgttagcacccaggaggctgaaacagggcagGTTTTGaatgtgcttttagcctcttaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgagaggtCGTTACAAGAGCCTACCCATGTGACGTGATGGTACTGAAGCACTCGTCTTGCCGACTCAACACCAGAACTAAACAGAAATGAATTAacacaacttttatgcatttctgtcacatctactgcagtcagattcactgtctTCACCCATGTGGAATGACtccacatgggtaggcactagTAATGACATCTCCAACATGTTAAGAGGGTAAAAGCAGGTTTAAAACctgccctgtttcagcctcctgggagCTAAGCGAGCTAGCAGGAGAATAACACAGTGTAGGCAGGCCCCTCATGCTCCATCCCAAGCCCAAGTTAGTGCCTCTATGGCTGGGAGTTGACCTCCAGGGCCCTCAGCCTCACCTCCCGTCCCcgttttcgtttttctcgctactgacagcactccaaatttacaaccAACAGAGCTAAGTGTTGAAATCCACCGGGATTCTCCTTTAAGCTAGTCTCTacccatagatatatatgtCAGTATATATCTATCTCTATGGTCTTTACCTTCGCagcgtcacccagatcgttggtctgattggttgaaggactatccaattacgcccagaggcatttgagcggcgtccgttggtgatgccctctttggaaatgggctgtgaataaagcttccccagaccccccctctctcagttacagctgagaagggtctggggtCAGCCAGGCTAGCAGATCAGTGAAGACTCCCACCTCTATGGGTCTGTGACGTTGTGTTCGCCAACATCAAGCTGTGAGGAAAGTGTTGGGCGGATGAAGTCTCTGATGTTTCTGGAGGTTTACTTGAGATCAGATTATGGGATGTGGCCCGTTGAGTTTGACCCTCTCCCCCCCTGAGCATCTTCTGCAGTAGCGCCAACGCTCGTTTAGGTTAACCACTTTAGAAAGTGCAGATTAAAGTCATCTTATTGGTAGAGCTGCAACGATCAGTCGACAGAAAAATTATCGCCAACTATTTCATTCAATCGTTAAGTCACTTTTCatgcaaaaatgtcagaaacgTCTGTTTTCATCCTCTCAGATATGAAGGTTTAGTTTGATATCAGATTCAAAAAACACAGCAGAGGTGACAGTTAGGGGCCAAAGAAACATTTAGGAAAGagaaatttaaagaaaaaacggccaaaatgttgattaaaggcccagacacaccaaccagacggccgaccgtcggcagtaAAGCCAGTGGGACTGATcagtagggctgtcctcgacaaaagaaattcttagtcgactaacacttataggattttgtcgactaatcgattagttgatttaattgaccGAGCTGTGtgctttgagaggtggttaagactagaaaagcacaatataaatgtagttaattaaccatctttaaaactgagtttctccacaattaatcctgcaaaagaaCCACTTTAAATCTTATGTTTACCAGAAATGTGCTCAGAAGtttcctgaaataaataattaagcatgaataagcataaaaaatgactaatcgactaaagaaatcttagtcgactaagaccaaaacgaccgattagtcgactaatcgactaagaggtggcagccctactgatcagtctccccgagttggtccagaaagttcctcagaacactgAAGAGACAAGCCCTAATaagtctccataacagcaggcggcgctaatctggattgtcgcccaaaaaatgaaaaccggcagctgattggacgaacgcgtcacgtgggtttggtttctctggaaattcaaagcaagactgtcatggcggctcgttcagaatacgatctcatattggactaaaatagttcaccgagacatgtttctggaaatatttgaagagagaaataggccgtgcgtctctgtgtgtgtgtttgtgtgt

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257364 lncRNA upstream 10982 35879484 ~ 35880060 (+) True G189845
TU257352 lncRNA upstream 13108 35697127 ~ 35877934 (+) False LOC120546463
TU257348 lncRNA upstream 67182 35816753 ~ 35823860 (+) True G189830
TU257345 lncRNA upstream 68830 35816159 ~ 35822212 (+) True G189827
TU257347 lncRNA upstream 70663 35808826 ~ 35820379 (+) True G189829
TU257384 lncRNA downstream 44376 35955057 ~ 35981248 (+) True G189857
TU257388 lncRNA downstream 44376 35955057 ~ 35963080 (+) False G189857
TU257392 lncRNA downstream 44376 35955057 ~ 36018166 (+) False G189857
TU257386 lncRNA downstream 45253 35955934 ~ 36018166 (+) False G189857
TU257391 lncRNA downstream 45253 35955934 ~ 35963080 (+) False G189857
XM_039781390.1 mRNA upstream 13101 35860792 ~ 35877941 (+) True LOC120546463
XM_039781750.1 mRNA upstream 35011 35843762 ~ 35856031 (+) True LOC120546647
XM_039781751.1 mRNA upstream 35011 35843762 ~ 35856031 (+) False LOC120546647
XM_039781389.1 mRNA upstream 358059 35526888 ~ 35532983 (+) True LOC120546462
XM_039781774.1 mRNA upstream 487773 35389709 ~ 35403269 (+) True ccr6a
XM_039781768.1 mRNA downstream 1815 35912496 ~ 35917525 (+) False zbtb25
XM_039781769.1 mRNA downstream 1855 35912536 ~ 35917525 (+) True zbtb25
XM_039781738.1 mRNA downstream 322269 36232950 ~ 36257742 (+) True LOC120546641
XM_039781731.1 mRNA downstream 358607 36269288 ~ 36313267 (+) True LOC120546639
XM_039781730.1 mRNA downstream 358607 36269288 ~ 36313267 (+) False LOC120546639
TU257294 other upstream 360699 35526848 ~ 35530343 (+) False LOC120546462
TU257254 other upstream 583607 35251780 ~ 35307435 (+) True G189770
TU257245 other upstream 591064 35298961 ~ 35299978 (+) True G189769
TU257244 other upstream 640407 35249741 ~ 35250635 (+) False G189769
TU257162 other upstream 724654 35158223 ~ 35166388 (+) True G189723
TU257342 other downstream 1839 35912520 ~ 35916478 (+) False zbtb25
TU257395 other downstream 71137 35981818 ~ 36019599 (+) True G189858
TU257398 other downstream 71137 35981818 ~ 36019599 (+) False G189858
TU257460 other downstream 303200 36213881 ~ 36214599 (+) True G189895
TU257465 other downstream 463619 36374300 ~ 36375834 (+) True G189897

Expression Profile