RNA id: TU257404


Basic Information

Item Value
RNA id TU257404
length 287
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G189860
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36014014 ~ 36017327 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAaactggaaactctcagCCTGAGGTACTGTcgtctgtcagagagaagctgtgaagatctgtcctcagttctcagctctgagtcctctagtctgagagaccTGGACCTGAGAAGAAACGACCTGAAGGATTCAGCGCTGAAGAAGCTCTCTGCTGGACTTCAGAGTCCCCACTGTAAAATAACCATATGACATAAATGTTCTTCTTAGAAATGATGAAATGATCTCCTCGGGCTGAACAAACAAGACTAGACCAAAACAGAGAAGAGaccagaggcctggactac

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257338 lncRNA upstream 28329 35891042 ~ 35985685 (+) False G189821
TU257384 lncRNA upstream 32766 35955057 ~ 35981248 (+) True G189857
TU257388 lncRNA upstream 50934 35955057 ~ 35963080 (+) False G189857
TU257391 lncRNA upstream 50934 35955934 ~ 35963080 (+) False G189857
TU257344 lncRNA upstream 99311 35866508 ~ 35914703 (+) True G189826
TU257413 lncRNA downstream 39206 36056533 ~ 36087702 (+) True G189869
XR_005636908.1 lncRNA downstream 104778 36122105 ~ 36133095 (+) False LOC120546684
XR_005636916.1 lncRNA downstream 107447 36124774 ~ 36127996 (+) True LOC120546689
XR_005636907.1 lncRNA downstream 114371 36131698 ~ 36133095 (+) True LOC120546684
XR_005636918.1 lncRNA downstream 143191 36160518 ~ 36165136 (+) True LOC120546691
XM_039781768.1 mRNA upstream 96489 35912496 ~ 35917525 (+) False zbtb25
XM_039781769.1 mRNA upstream 96489 35912536 ~ 35917525 (+) True zbtb25
XM_039781390.1 mRNA upstream 136073 35860792 ~ 35877941 (+) True LOC120546463
XM_039781750.1 mRNA upstream 157983 35843762 ~ 35856031 (+) True LOC120546647
XM_039781738.1 mRNA downstream 215623 36232950 ~ 36257742 (+) True LOC120546641
XM_039781731.1 mRNA downstream 251961 36269288 ~ 36313267 (+) True LOC120546639
XM_039781730.1 mRNA downstream 251961 36269288 ~ 36313267 (+) False LOC120546639
XM_039781735.1 mRNA downstream 251961 36269288 ~ 36313267 (+) False LOC120546639
XM_039781733.1 mRNA downstream 251961 36269288 ~ 36313267 (+) False LOC120546639
TU257342 other upstream 97536 35912520 ~ 35916478 (+) False zbtb25
TU257294 other upstream 483671 35526848 ~ 35530343 (+) False LOC120546462
TU257254 other upstream 706579 35251780 ~ 35307435 (+) True G189770
TU257245 other upstream 714036 35298961 ~ 35299978 (+) True G189769
TU257244 other upstream 763379 35249741 ~ 35250635 (+) False G189769
TU257460 other downstream 196554 36213881 ~ 36214599 (+) True G189895
TU257465 other downstream 356973 36374300 ~ 36375834 (+) True G189897
TU257496 other downstream 365581 36382908 ~ 36398240 (+) False LOC120546466
TU257528 other downstream 519352 36536679 ~ 36541312 (+) True G189944
TU257569 other downstream 634876 36652203 ~ 36653482 (+) False xrcc3

Expression Profile