RNA id: TU257413


Basic Information

Item Value
RNA id TU257413
length 397
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G189869
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36056533 ~ 36087702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catacagtacactagtactctcatacagtacactaatactctcatacagtacactagtcctctcatacagtactctagtactctcatacagtactctagtactctcatacagtactctagtacTCTCTAAAGTTAATGTGATTTTACACTAAAGTCTGATCCATTTAagagatttttcatttttaattccATGAAACTAGAAAACCactgtaacactttacaatcaTCTTAATACtgacctgagagtttccagtttacagtgtggactctgaagtccagcagagagattcttcactcctgaatccttcagGTTGTTCTCACTCAGGTCCAggtctctcagactagaggactcagagctgagaactgaggacagatcttcacagcttctctctgacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257392 lncRNA upstream 38367 35955057 ~ 36018166 (+) False G189857
TU257386 lncRNA upstream 38367 35955934 ~ 36018166 (+) False G189857
TU257390 lncRNA upstream 38367 35970775 ~ 36018166 (+) False G189857
TU257404 lncRNA upstream 39206 36014014 ~ 36017327 (+) True G189860
TU257385 lncRNA upstream 40644 35970775 ~ 36015889 (+) False G189857
XR_005636908.1 lncRNA downstream 34403 36122105 ~ 36133095 (+) False LOC120546684
XR_005636916.1 lncRNA downstream 37072 36124774 ~ 36127996 (+) True LOC120546689
XR_005636907.1 lncRNA downstream 43996 36131698 ~ 36133095 (+) True LOC120546684
XR_005636918.1 lncRNA downstream 72816 36160518 ~ 36165136 (+) True LOC120546691
TU257429 lncRNA downstream 91214 36178916 ~ 36179450 (+) True G189879
XM_039781768.1 mRNA upstream 139008 35912496 ~ 35917525 (+) False zbtb25
XM_039781769.1 mRNA upstream 139008 35912536 ~ 35917525 (+) True zbtb25
XM_039781390.1 mRNA upstream 178592 35860792 ~ 35877941 (+) True LOC120546463
XM_039781750.1 mRNA upstream 200502 35843762 ~ 35856031 (+) True LOC120546647
XM_039781738.1 mRNA downstream 145248 36232950 ~ 36257742 (+) True LOC120546641
XM_039781731.1 mRNA downstream 181586 36269288 ~ 36313267 (+) True LOC120546639
XM_039781730.1 mRNA downstream 181586 36269288 ~ 36313267 (+) False LOC120546639
XM_039781735.1 mRNA downstream 181586 36269288 ~ 36313267 (+) False LOC120546639
XM_039781733.1 mRNA downstream 181586 36269288 ~ 36313267 (+) False LOC120546639
TU257395 other upstream 36934 35981818 ~ 36019599 (+) True G189858
TU257398 other upstream 36934 35981818 ~ 36019599 (+) False G189858
TU257342 other upstream 140055 35912520 ~ 35916478 (+) False zbtb25
TU257294 other upstream 526190 35526848 ~ 35530343 (+) False LOC120546462
TU257254 other upstream 749098 35251780 ~ 35307435 (+) True G189770
TU257460 other downstream 126179 36213881 ~ 36214599 (+) True G189895
TU257465 other downstream 286598 36374300 ~ 36375834 (+) True G189897
TU257496 other downstream 295206 36382908 ~ 36398240 (+) False LOC120546466
TU257528 other downstream 448977 36536679 ~ 36541312 (+) True G189944
TU257569 other downstream 564501 36652203 ~ 36653482 (+) False xrcc3

Expression Profile