RNA id: TU257570


Basic Information

Item Value
RNA id TU257570
length 1518
lncRNA type sense_over
GC content 0.52
exon number 3
gene id xrcc3
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36652178 ~ 36664382 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtctctgattgtgcgtctctgattgtgtctctctgcaggacgtcctgattgtgtgtctctgagtgtgtgtctctgattgtgtgtctctgagtgtgtgtctctgattgtgtgtctctgagtgtgtgtctctgattgtgtgtctctgagtgtgtgtgtctctgagtgtgtgtctctgattgtgtgtctctgattgtgtgtctctctgcaggaagtcctgagtgtgtgtctctgattgtgcgtctctgattgtgtgtctctctgcaggacgtcctgagtgtgtgtctctgagtgtgtgtctctgagtgtgtgtctctgattgtgtgtctctctgcaggacgtcctgagtgtgtgtctgtcccgcCGCGTGCCGCTGCTGCTGGCTCGCCAACACGTTCGCCTCGTGGTGGTGGACTCGGTGGCGGCGCTGTTCAGGTCTGAGTTCcaggcttctgattggctggagaggagcaaacagctgatcagcttctcacacacactgcacacgcTGAGCCTGGAGTTCAACACACCTGTTCTCTGTATCaaccaggtgACGGATGTTTTCAGCTCTGATGACAGTTTGGGgcctGTGTCTGGCGCCGTGGCGCCGGCTCTGGGGTTGGTCTGGGCCAATCAGGTGATGGTTCGGCTGATGATGCGGCGTCTCCAGGGGACGGTTGCCCGGGGCGACCAGAGCAGCACCCTCCGCAGGCTGGAGGTGGTGTTCGCTCCACATCTGGCCCGGGACGGCAGAGATGCTGCAGTCTGGAGGGAGGGGGTCCTGGGAGTGGCCCGCTCAGATTATAACACACGGACAGATGTGTAGTAACATACGGACAGATGTGTAGTAACACACGGACAGATGTGTAGTAACACACGGACAGATGTGTagtaacacagagacagatgtgtagtaacacagagacagatgtgtagtaacacagagacagatgtgTAGTAACACAGGGACAGATGTGTagtaacacagagacagatgtgtagtaacacagagacagatgtgtagtaacacagagacagatgtgTAGTAACACAGGACAGATGTGTAGTAACACACGGACAGATGTGTAGTAACACGGACAGATGTGTAGTAACACACGGACAGATGTGTAGTAACACAGGGACAGATGTGTagtaacacagagacagaagtgttgtaacacagagacagaagtgTATAATATAGTTGCATTAGTTTTAAATACTGAGAACAGTTTAATATGAACGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCTGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCAGTTCCTCCCGTGATGTCGTCTGTTCCTCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257572 lncRNA upstream 7024 36654140 ~ 36654916 (+) True G189963
TU257573 lncRNA upstream 34297 36603968 ~ 36627643 (+) True G189964
TU257540 lncRNA upstream 79919 36581450 ~ 36582021 (+) True G189951
TU257541 lncRNA upstream 79919 36581450 ~ 36582021 (+) False G189951
TU257543 lncRNA upstream 79919 36581450 ~ 36582021 (+) False G189951
TU257608 lncRNA downstream 36103 36700485 ~ 36751626 (+) False G189981
TU257601 lncRNA downstream 42499 36706881 ~ 36775559 (+) True G189978
TU257616 lncRNA downstream 49913 36714295 ~ 36724052 (+) True G189985
TU257618 lncRNA downstream 51001 36715383 ~ 36715998 (+) True G189986
TU257607 lncRNA downstream 83650 36748032 ~ 36751626 (+) True G189981
XM_039781393.1 mRNA upstream 216659 36382917 ~ 36445281 (+) True LOC120546466
XM_039781786.1 mRNA upstream 328887 36330145 ~ 36333053 (+) True LOC120546666
XM_039781735.1 mRNA upstream 348673 36269288 ~ 36313267 (+) False LOC120546639
XM_039781762.1 mRNA downstream 1699 36666081 ~ 36679578 (+) False LOC120546651
XM_039781763.1 mRNA downstream 1711 36666093 ~ 36681833 (+) True LOC120546651
XM_039781760.1 mRNA downstream 1711 36666093 ~ 36679578 (+) False LOC120546651
XM_039781764.1 mRNA downstream 1711 36666093 ~ 36678038 (+) False LOC120546651
XM_039781745.1 mRNA downstream 60968 36725350 ~ 36746137 (+) True LOC120546644
TU257569 other upstream 8458 36652203 ~ 36653482 (+) False xrcc3
TU257528 other upstream 120628 36536679 ~ 36541312 (+) True G189944
TU257496 other upstream 263700 36382908 ~ 36398240 (+) False LOC120546466
TU257465 other upstream 286106 36374300 ~ 36375834 (+) True G189897
TU257460 other upstream 447341 36213881 ~ 36214599 (+) True G189895
TU257530 other downstream 258050 36922432 ~ 36949307 (+) False LOC120546470

Expression Profile