RNA id: TU257601


Basic Information

Item Value
RNA id TU257601
length 671
lncRNA type read_through
GC content 0.34
exon number 2
gene id G189978
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 36706881 ~ 36775559 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagacaggcagacagacagacagacagacagacagacagacagacagacagacatgaAGAAGCTTGGGGGAGGACCAGGGGCTGTTTGTTGTCCCCCCTGTCATGCCAGCAGATGTCCAGCAGGGGGACGAAATGAGAAGCATGAAATCTTCCTGAATGATTTTACACTGAGCTTCATTAGTTTTCATCCtaacatatatgtatatgtatatgtatacatatatgttAGGATGATAAATggtatatatttacatatatgtatatgtgcagTGTTTATTTCTGAGTGTGAGGATTTGATGACGCTGTAAAATAAGTTAAGTTTGTAGTGGCATTGTACTGTATTTCATTACTGTGATATCTCTGTTCCATCGATCAGTTTAATGAGCAGAAACAGTTTCATGTTTGACAGTTTTACTTTCAGACTGTTTCTTCTAATCACTGCTTCTCTTATTGATCATTCGTATATTAAAAACTACTCAAATAAAGACTTATGCCTGTAAAACTCCAGTCTGCCGAAATATCACTAaagacatttaaatttaaatctcTCATTAAAGCAGATTTAACTTTAGTTCAtgaaattgttaaatttaaaaagaaagtctGTATTCATAATCCTGATAGATTTTGAACAATTTCAGTGTGGCAATGAcaaataattttaataaatg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU257570 lncRNA upstream 42499 36661940 ~ 36664382 (+) True xrcc3
TU257582 lncRNA upstream 43571 36662951 ~ 36663310 (+) True G189973
TU257572 lncRNA upstream 51965 36654140 ~ 36654916 (+) True G189963
TU257573 lncRNA upstream 79238 36603968 ~ 36627643 (+) True G189964
TU257541 lncRNA upstream 124860 36581450 ~ 36582021 (+) False G189951
TU257636 lncRNA downstream 50517 36826076 ~ 36826284 (+) True G190000
XR_005636904.1 lncRNA downstream 51122 36826681 ~ 36831183 (+) True LOC120546682
XR_005636905.1 lncRNA downstream 51130 36826689 ~ 36831183 (+) False LOC120546682
TU257637 lncRNA downstream 51139 36826698 ~ 36826910 (+) False LOC120546682
TU257639 lncRNA downstream 51994 36827553 ~ 36831059 (+) False LOC120546682
XM_039781763.1 mRNA upstream 25048 36666093 ~ 36681833 (+) True LOC120546651
XM_039781762.1 mRNA upstream 27303 36666081 ~ 36679578 (+) False LOC120546651
XM_039781760.1 mRNA upstream 27303 36666093 ~ 36679578 (+) False LOC120546651
XM_039781764.1 mRNA upstream 28843 36666093 ~ 36678038 (+) False LOC120546651
XM_039781394.1 mRNA upstream 43092 36652178 ~ 36663789 (+) False xrcc3
XM_039781795.1 mRNA downstream 15060 36790619 ~ 36793487 (+) True tmem251
XM_039781784.1 mRNA downstream 21636 36797195 ~ 36825407 (+) True ubr7
XM_039781397.1 mRNA downstream 100220 36875779 ~ 36950069 (+) True LOC120546470
TU257569 other upstream 53399 36652203 ~ 36653482 (+) False xrcc3
TU257528 other upstream 165569 36536679 ~ 36541312 (+) True G189944
TU257496 other upstream 308641 36382908 ~ 36398240 (+) False LOC120546466
TU257465 other upstream 331047 36374300 ~ 36375834 (+) True G189897
TU257460 other upstream 492282 36213881 ~ 36214599 (+) True G189895
TU257530 other downstream 146873 36922432 ~ 36949307 (+) False LOC120546470

Expression Profile