RNA id: XM_039780900.1


Basic Information

Item Value
RNA id XM_039780900.1
length 975
RNA type mRNA
GC content 0.44
exon number 7
gene id mrps10
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21224551 ~ 21226805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTTGTCCTACCACcttcattgacatatataaaagaccACCTTCCCTCTCCAAAAACATGGCTGCTCCCATGGCTCTCAGACGAGAATTATTTTCTCTGGCAAGGAAAATCAGTGGAGTCTCACATTTGACACCGAGAGCTTTGGGCGCCTGTTCAAGTCACAGGAAAtgtaatataatcagGTCCCATCTCCCATTGGCGTCCAGCACTTCCTTCCACACAGCAACATTGTTTTTATCAACACCTTCATCAATCACTGTAACAGAAGAGCCCGACACACTGTTTCAAAAGGTGTCACTGTTGGTCAAAGGCCATGACAGGGCCGTGTTGGACAGCTATGAGTTCTTTGCCACCATGGCAGCTAAAGAGCTGGGcatcaacatcaacaaagtTCATGAACTTCCCAAGGACATGGAGAGGTTTACACTCCTGAAGTCAGTTCACATCTTTAAAAATCACAGGGTCCAGTATGAGATGAGGACACACTACCGGTGCATCGAGCTGTCTCATATAACAGGTTGCACAGCGCAGGTTTACCTTGAATACATCCAGAGGAACCTCCCTGAAGGGGTAGCCATGGAGGTGACAAAGaccgccatggagaagGTTCCAGATCACATCCTTGAACCCATGTGGGAGGACCACCCCATTGATGACAAGTCCAGCCAGTGAAGTCATTGATGAGCGACAGATGCTTATTGGATGCGTTTTCTTAGAGAATATGTTTGGTGAATGGGAAGACATGGAAAAACCGCAATAGTAACATATGTTTGTCATGGACTCGTGAACTGCTCATCACATAGATTTCAACATTATCATCGATGGAGCTGAACACACCACAGAAAAAAGGGCCAGCTGTACAACTTGCATTTATTATGTCCATGTGTAACAGTCTTCATTTACTatcagtgtgtgttttcattgtcTTTTCTGTGGCAAAACAGTGTGGAATTAAATATTATTCAGATTTTAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02946 RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252054 lncRNA upstream 51912 21170982 ~ 21172639 (+) False gtf2h5
TU252055 lncRNA upstream 51912 21170982 ~ 21172639 (+) False gtf2h5
TU252056 lncRNA upstream 51912 21170982 ~ 21172639 (+) False gtf2h5
TU252057 lncRNA upstream 51912 21170982 ~ 21172639 (+) True gtf2h5
TU252044 lncRNA upstream 71376 21151461 ~ 21153175 (+) False LOC120546175
TU252169 lncRNA downstream 121139 21347944 ~ 21348581 (+) True G186210
TU252179 lncRNA downstream 247747 21474552 ~ 21475304 (+) True G186220
TU252261 lncRNA downstream 313783 21540588 ~ 21542781 (+) True G186297
XR_005636932.1 lncRNA downstream 518776 21745581 ~ 21746554 (+) True LOC120546760
XR_005637027.1 lncRNA downstream 606143 21832948 ~ 21833782 (+) True LOC120547080
XM_039782588.1 mRNA upstream 45635 21177476 ~ 21178916 (+) True dynlt1b
XM_039782889.1 mRNA upstream 51912 21170948 ~ 21172639 (+) False gtf2h5
XM_039782892.1 mRNA upstream 51912 21170956 ~ 21172639 (+) False gtf2h5
XM_039782888.1 mRNA upstream 51912 21170987 ~ 21172639 (+) False gtf2h5
XM_039782891.1 mRNA upstream 51912 21170999 ~ 21172639 (+) False gtf2h5
XM_039781535.1 mRNA downstream 20858 21247663 ~ 21251189 (+) False ppil6
XM_039781534.1 mRNA downstream 21109 21247914 ~ 21251189 (+) True ppil6
XM_039781537.1 mRNA downstream 25175 21251980 ~ 21266573 (+) False cd164
XM_039781536.1 mRNA downstream 25177 21251982 ~ 21266573 (+) True cd164
XM_039782901.1 mRNA downstream 48052 21274857 ~ 21323086 (+) True sesn1
TU251678 other upstream 1364346 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1576395 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1685243 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 717938 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 758974 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2351573 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2351573 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2852798 24079603 ~ 24083104 (+) True G186975

Expression Profile