RNA id: XM_039780940.1


Basic Information

Item Value
RNA id XM_039780940.1
length 2688
RNA type mRNA
GC content 0.45
exon number 15
gene id serac1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21163218 ~ 21170361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGTTTGATGACGTGTTATTTGTGAGACAAGTGTTTATGAACACCGGTCGGTCGGCGCTGCAGTCAAGAACATCACGGTAGTCCTCtataaataagGCGGAGGATGTCTGGTGCAGCTCTACGTTTGATCCGCTGTCGGAGACTGAGCACAGCTGGGCCGCCTGGAGTCAGGAAAGTGCTTCAGTGGAAGGATTTAAGGCTCACACACAAAGCAAGGAGGGAACTTCATAAAGCAGCAAGGCGGTTTCTGGAAATATCATCTAGGGTTTTCCTGCAAACACTAGACGAGCACTTCAGCCATGTAGATGCAGACCCACATGAGGTGGCATTATGGGTCTTACTAAAGAGGACACGGTCAGCCAACAAAGCTATCAGACTACAGGCTGTTGAAGAACTTGCAGAAAATCACCACTGGCACGACTACCAGTACCAGACAGCAGCCCAGGTTATAGACCAAGGAACAGCAGTGGGCCTGGCCCGGACTCCTCAGGTAGACCTTAGATTCTTCTTGCGCTCACCTGCACTGCGTGACCTTGAGGATGGTTTGTCAGCAGAGGATGGACTGAGGCAGCTGCTGGCATCTCTGCCTCAGTCTGAGGTGGACAAATGTGTTCAGTACTTCACCTCACTGGCCCTCAGAGAGAGCACTCAGTCATTGGCAGCACAACGGGGTGGTCTGTGGTGTTTTGGAGGTAATGGGCTGCCTTACGCCCAGAGCCTCACCTCTGTTCCCTCTGAGAAGGTGGAATCTTTCTGCCTACAGGCATTGGTACAGCACTCAAAGGTCCAGAGCCACTGTGACCACATAGTTGCCAACGGGGGTCTTCAGCTCCTCCAAAGGGTTTATCAGCTTCGTAGAGACTCCCTGAAGATTCAGAGGAACATTGTTCGTATCATAGGAAATTTGGCACTCAATGAAGGTGTTCACCAGGCCATAACCCAGTCTGGCTGGGTTTCTGTCCTGGCTGAGATGATGCAGTCTCCTCATGTTATGCAGGCATCTCATGCAGCCCGCGCTCTGGCCAACCTGGATAGGGAGACGGTAAAAGAGAAATACCAAGACGGTGTCTATATCCTCCACCCACAAACACGTTGCAACCAGCCAATCAAAGCAGACGTGCTCTTTATTCATGGGATTCTCGGGGCAGCTTTTAAGACATGGAGGCAGAAGGACCGCAATATGttagaggaagagaaggaagcAGAAAGCAGGGACGACTACACAGAGTGCTGGCCAAAGTCATGGTTGGCTGCTGATTGTCCAAATCTGAGAGTACTATCGGTGGAGTATGACAGTCATCTCAGTGACTGGATGGCCAAATGTCCCGCTGAGAATCAGAGGAAGTCCTTGGCCTACAGAAGTCGAGAGCTGCTAAAGAAGTTAAAGCTGGCAGGAGTTGGAGAGAGGCCTGTGGTCTGGGTAGCCCACAGCATGGGAGGATTGCTTGTGAAGAAAATGCTGCTGGATGCCTCAGAGGACCCAGATATGCATGGACTGTTAAAGAATACCAAGGGCATTATGTTCTATAGTGTTCCACACCATGGCACCTTTATGGCAGAGTACTCAGTCAATGTCAGATATCTCCTCTTTCCCTCTGTAGAAGTCAGAGAACTTTGTAAAGactcacCAGCACTGCGCAACCTGAATGAGAACTTCCTGAACATGGCCAAAGAAAAGGAAATCAAGGTGCTGAGCTTTGCAGAGACGCTGCCGACAAACATTGGTCCCATGATCAAGATACTAGTGGTACCAACACAGTCAGCAAATCTCGGCATCGGGGAGCTCATCGAGGTAGACGTAGATCATCTTAACATCTGCAAACCGGAGAAGAAGGACTCATTTCTGTACAAGCGCAGCCTGCAGTTCATCCTAGAAGCACTGCAGAGCTATATCAGCCACTGACTGAAATatatgaacacaaacacactgataaAACCCTTGAAATGGGGGAGAGCACTgattcccccctccccccaaaccAAATGGAAACATAACTGCCTCTCCTTGTTTACATTAACATAAATGTCTTTGCTCctttcagaaaataaaaaaatgtgaccACAAAAAACACCACCACTAATTTGATCACAGTATAATTAGGAAAATTAATTGTATTTTACTCAATGGTGGATTTCTGTGAAGAGCTGTACGTTGTGATGAAAAAGAACATGGTGAACATGTTTTGTTCTCCTAGCCATCCTCCTAGATTGGTCTATCTCTAGTGAGTCAGATTTTTAAAGATCATTCACATTTTTAAAGAACATAATTACTACTCTGACTTTCAAATAATTGAATTGTTTTTCTAGATTTTaattttctgtcactttttccatttcatctttgatttacCAGTTTAACATATGACACATATTGCTCATACAATATTTACTTACAGATGCACTGACATGTCTTTGCCACTCAAGTATTTTTGACCAGAGtggtttaaaatgttattttttaaatgtatgtattttattcTAACTACCGTATCACAGTCATATTGTCTGCCAAAACGTATTCCTTCCTGAACTTTACCTCAAATGGACCTGTATTAATATTAGTTTAGGttgcttgatttatttgtatgGGACTAATCAAGCAATTGGTTTTAAATATCCATGGGTTTTTAGTCCAAATTGCCACTAGCAATGCTGACAATGAATAAATGTATGAAGTTGGAGTCGGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006505 GPI anchor metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636823.1 lncRNA upstream 10034 21151457 ~ 21153184 (+) False LOC120546175
TU252046 lncRNA upstream 10043 21151444 ~ 21153175 (+) True LOC120546175
TU252044 lncRNA upstream 10043 21151461 ~ 21153175 (+) False LOC120546175
TU252027 lncRNA upstream 101242 21060757 ~ 21061976 (+) True G186106
TU252015 lncRNA upstream 130036 21032641 ~ 21033182 (+) True G186094
TU252054 lncRNA downstream 621 21170982 ~ 21172639 (+) False gtf2h5
TU252055 lncRNA downstream 621 21170982 ~ 21172639 (+) False gtf2h5
TU252056 lncRNA downstream 621 21170982 ~ 21172639 (+) False gtf2h5
TU252057 lncRNA downstream 621 21170982 ~ 21172639 (+) True gtf2h5
TU252169 lncRNA downstream 177583 21347944 ~ 21348581 (+) True G186210
XM_039780945.1 mRNA upstream 332 21159956 ~ 21162886 (+) True myct1a
XM_039780941.1 mRNA upstream 150982 20999574 ~ 21012236 (+) True esr1
XM_039780944.1 mRNA upstream 166593 20992466 ~ 20996625 (+) True armt1
XM_039780932.1 mRNA upstream 183055 20937518 ~ 20980163 (+) True akap12b
XM_039782889.1 mRNA downstream 587 21170948 ~ 21172639 (+) False gtf2h5
XM_039782892.1 mRNA downstream 595 21170956 ~ 21172639 (+) False gtf2h5
XM_039782888.1 mRNA downstream 626 21170987 ~ 21172639 (+) False gtf2h5
XM_039782891.1 mRNA downstream 638 21170999 ~ 21172639 (+) False gtf2h5
XM_039782588.1 mRNA downstream 7115 21177476 ~ 21178916 (+) True dynlt1b
TU251678 other upstream 1303013 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1515062 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1623910 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 774382 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 815418 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2408017 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2408017 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2909242 24079603 ~ 24083104 (+) True G186975

Expression Profile